miRNA display CGI


Results 21 - 40 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22269 3' -57.5 NC_005045.1 + 16753 0.75 0.163653
Target:  5'- gCCGACCACGUugcccacgGCGCCGgggaacuUCCgGACCACc -3'
miRNA:   3'- -GGCUGGUGUA--------UGUGGC-------GGGgCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 17294 0.68 0.425686
Target:  5'- gCCGugUACuucaacgACGCCGagCCGACCAUc -3'
miRNA:   3'- -GGCugGUGua-----UGUGGCggGGCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 18127 0.7 0.313973
Target:  5'- gCgGGCguCGUucuGCGCCGCCCCGACa-- -3'
miRNA:   3'- -GgCUGguGUA---UGUGGCGGGGCUGgug -5'
22269 3' -57.5 NC_005045.1 + 18698 0.69 0.379093
Target:  5'- cCUGGCCggaGCGUgaugcugGCGCCGCCgCGACCc- -3'
miRNA:   3'- -GGCUGG---UGUA-------UGUGGCGGgGCUGGug -5'
22269 3' -57.5 NC_005045.1 + 18748 0.68 0.444866
Target:  5'- uCCGGCCAgG---GCCGCCCCaggucauuGCCGCc -3'
miRNA:   3'- -GGCUGGUgUaugUGGCGGGGc-------UGGUG- -5'
22269 3' -57.5 NC_005045.1 + 18786 0.68 0.425686
Target:  5'- aUGugCugGUACGCCGCaCCaagcaccaGACCAa -3'
miRNA:   3'- gGCugGugUAUGUGGCG-GGg-------CUGGUg -5'
22269 3' -57.5 NC_005045.1 + 19244 0.66 0.536547
Target:  5'- aCGugCAUcgggaaGUACACUGCCuuG-CCAUg -3'
miRNA:   3'- gGCugGUG------UAUGUGGCGGggCuGGUG- -5'
22269 3' -57.5 NC_005045.1 + 20212 0.67 0.505122
Target:  5'- gCC-ACCugGgACugACCGCCCUGGCCuGCg -3'
miRNA:   3'- -GGcUGGugUaUG--UGGCGGGGCUGG-UG- -5'
22269 3' -57.5 NC_005045.1 + 21507 0.66 0.536547
Target:  5'- gCCGauGCCACugGCACCgGCaCUCGACgACg -3'
miRNA:   3'- -GGC--UGGUGuaUGUGG-CG-GGGCUGgUG- -5'
22269 3' -57.5 NC_005045.1 + 22323 0.67 0.484618
Target:  5'- gCCGACCugGaACcUCGCCCCuggcGAgCACu -3'
miRNA:   3'- -GGCUGGugUaUGuGGCGGGG----CUgGUG- -5'
22269 3' -57.5 NC_005045.1 + 22533 0.68 0.407007
Target:  5'- aUCGACUACc-GCACCcuugGCCUCGuCCACg -3'
miRNA:   3'- -GGCUGGUGuaUGUGG----CGGGGCuGGUG- -5'
22269 3' -57.5 NC_005045.1 + 23198 0.75 0.159699
Target:  5'- cCCGGCUGCc-GCGCCGaCCCCGaACCAUg -3'
miRNA:   3'- -GGCUGGUGuaUGUGGC-GGGGC-UGGUG- -5'
22269 3' -57.5 NC_005045.1 + 23309 0.68 0.407007
Target:  5'- cCCGACCcaGCAgccGCAacCUGUUCCGACCAg -3'
miRNA:   3'- -GGCUGG--UGUa--UGU--GGCGGGGCUGGUg -5'
22269 3' -57.5 NC_005045.1 + 23391 0.66 0.547176
Target:  5'- cCCGuuguuCCGCAaGCACCcgcucagccgGCCCCGGuagcuCCGCc -3'
miRNA:   3'- -GGCu----GGUGUaUGUGG----------CGGGGCU-----GGUG- -5'
22269 3' -57.5 NC_005045.1 + 23432 0.71 0.27042
Target:  5'- uUGACCuGCGgcagGCACCGCCaCCGGCUg- -3'
miRNA:   3'- gGCUGG-UGUa---UGUGGCGG-GGCUGGug -5'
22269 3' -57.5 NC_005045.1 + 24295 0.67 0.484618
Target:  5'- gCGACCugcguggcucgaACGUGguCCGCCUgGAUCGCc -3'
miRNA:   3'- gGCUGG------------UGUAUguGGCGGGgCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 24669 0.73 0.200157
Target:  5'- aUCGuCCGCAUGCACCGCCgcgucgucgagaccuUcauCGACCGCg -3'
miRNA:   3'- -GGCuGGUGUAUGUGGCGG---------------G---GCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 25726 0.68 0.444866
Target:  5'- aCUGucCCGCAUGCAcacCCGaUCCCGuCCGCu -3'
miRNA:   3'- -GGCu-GGUGUAUGU---GGC-GGGGCuGGUG- -5'
22269 3' -57.5 NC_005045.1 + 25972 0.7 0.313973
Target:  5'- aCCuGCUGCAUACcgACCaGCCCUGGCCGa -3'
miRNA:   3'- -GGcUGGUGUAUG--UGG-CGGGGCUGGUg -5'
22269 3' -57.5 NC_005045.1 + 26329 0.66 0.52494
Target:  5'- aCG-CCACGgGCACCaccuacaGCCacaCGGCCACu -3'
miRNA:   3'- gGCuGGUGUaUGUGG-------CGGg--GCUGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.