Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22269 | 3' | -57.5 | NC_005045.1 | + | 2192 | 0.67 | 0.474516 |
Target: 5'- cCUGACCACuccACGCaGUgCCGGCUACc -3' miRNA: 3'- -GGCUGGUGua-UGUGgCGgGGCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 2495 | 0.73 | 0.22008 |
Target: 5'- aUGGCUuCAUACAgCGCCuuGACUACg -3' miRNA: 3'- gGCUGGuGUAUGUgGCGGggCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 2647 | 0.69 | 0.354168 |
Target: 5'- --aACCugGc-CGCUGCCCUGGCCACg -3' miRNA: 3'- ggcUGGugUauGUGGCGGGGCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 3617 | 0.69 | 0.362631 |
Target: 5'- gCCGACa----GCAUCGUCaCCGGCCACg -3' miRNA: 3'- -GGCUGguguaUGUGGCGG-GGCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 4046 | 0.68 | 0.454635 |
Target: 5'- cUCGGCC-UGUACuGCUGCCUCGGCCuGCu -3' miRNA: 3'- -GGCUGGuGUAUG-UGGCGGGGCUGG-UG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 4301 | 0.72 | 0.25053 |
Target: 5'- aCCGACCGCGagcaACGCCGUCUcuuCGACCuCa -3' miRNA: 3'- -GGCUGGUGUa---UGUGGCGGG---GCUGGuG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 4749 | 0.72 | 0.231863 |
Target: 5'- aCGuggucuuCCACc-ACACCGCCCUGGCCAa -3' miRNA: 3'- gGCu------GGUGuaUGUGGCGGGGCUGGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 6028 | 0.69 | 0.38885 |
Target: 5'- uCCGGuCCGCAaGCuuCCGUaCCCGGCUGCg -3' miRNA: 3'- -GGCU-GGUGUaUGu-GGCG-GGGCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 8449 | 0.66 | 0.515514 |
Target: 5'- aUCGACCugGCGUAUgaGCUGCgCCGGCUgaGCg -3' miRNA: 3'- -GGCUGG--UGUAUG--UGGCGgGGCUGG--UG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 9462 | 0.68 | 0.425686 |
Target: 5'- aCGGCCcaACGaggGCGUCGCCCUGGCCGg -3' miRNA: 3'- gGCUGG--UGUa--UGUGGCGGGGCUGGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 10119 | 0.67 | 0.488688 |
Target: 5'- aCGAUCACGUACccguucuucuugaugAUgGCCUCGACgGCc -3' miRNA: 3'- gGCUGGUGUAUG---------------UGgCGGGGCUGgUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 11613 | 0.73 | 0.225906 |
Target: 5'- cUCGGCCuGCuggGUACACCagaCCCGGCCACg -3' miRNA: 3'- -GGCUGG-UG---UAUGUGGcg-GGGCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 11726 | 0.68 | 0.429482 |
Target: 5'- uCCGGCC-CGUGCggugacaucgagaauACCGCCCucguguucuaCGGCCAg -3' miRNA: 3'- -GGCUGGuGUAUG---------------UGGCGGG----------GCUGGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 12112 | 0.66 | 0.525991 |
Target: 5'- uCCGGCCAUcuucguacgGCACCcgGCCCUuguACCGCa -3' miRNA: 3'- -GGCUGGUGua-------UGUGG--CGGGGc--UGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 12160 | 0.68 | 0.435215 |
Target: 5'- aCCGACCAgGgugagugGCACUGgCCC-ACCAUc -3' miRNA: 3'- -GGCUGGUgUa------UGUGGCgGGGcUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 13494 | 0.71 | 0.298889 |
Target: 5'- aCCGacuGCCACAaggACACCGCCgCCGAggUCAa -3' miRNA: 3'- -GGC---UGGUGUa--UGUGGCGG-GGCU--GGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 14066 | 0.66 | 0.525991 |
Target: 5'- cCUGGCCAacaAgGCUGCCgaGACCGCa -3' miRNA: 3'- -GGCUGGUguaUgUGGCGGggCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 14144 | 0.67 | 0.494822 |
Target: 5'- cCCGGCgG---GCACCGCCaUgGGCCGCu -3' miRNA: 3'- -GGCUGgUguaUGUGGCGG-GgCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 14283 | 0.68 | 0.444866 |
Target: 5'- gCCGGuaacCCGCAaa-GCCGCCCgGACgACc -3' miRNA: 3'- -GGCU----GGUGUaugUGGCGGGgCUGgUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 15076 | 0.69 | 0.371233 |
Target: 5'- uUCGACgGCAgcgggaGCCGCCaCCGggGCCACc -3' miRNA: 3'- -GGCUGgUGUaug---UGGCGG-GGC--UGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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