Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22269 | 3' | -57.5 | NC_005045.1 | + | 12160 | 0.68 | 0.435215 |
Target: 5'- aCCGACCAgGgugagugGCACUGgCCC-ACCAUc -3' miRNA: 3'- -GGCUGGUgUa------UGUGGCgGGGcUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 18698 | 0.69 | 0.379093 |
Target: 5'- cCUGGCCggaGCGUgaugcugGCGCCGCCgCGACCc- -3' miRNA: 3'- -GGCUGG---UGUA-------UGUGGCGGgGCUGGug -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 23309 | 0.68 | 0.407007 |
Target: 5'- cCCGACCcaGCAgccGCAacCUGUUCCGACCAg -3' miRNA: 3'- -GGCUGG--UGUa--UGU--GGCGGGGCUGGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 33142 | 0.68 | 0.407007 |
Target: 5'- uCCGGuCCGaugcugACACgGCCCUGAgCCGCg -3' miRNA: 3'- -GGCU-GGUgua---UGUGgCGGGGCU-GGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 39948 | 0.68 | 0.416282 |
Target: 5'- gCGGCCcauCAUGCAgCGCCaCCGucugaucuuCCACg -3' miRNA: 3'- gGCUGGu--GUAUGUgGCGG-GGCu--------GGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 17294 | 0.68 | 0.425686 |
Target: 5'- gCCGugUACuucaacgACGCCGagCCGACCAUc -3' miRNA: 3'- -GGCugGUGua-----UGUGGCggGGCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 18786 | 0.68 | 0.425686 |
Target: 5'- aUGugCugGUACGCCGCaCCaagcaccaGACCAa -3' miRNA: 3'- gGCugGugUAUGUGGCG-GGg-------CUGGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 9462 | 0.68 | 0.425686 |
Target: 5'- aCGGCCcaACGaggGCGUCGCCCUGGCCGg -3' miRNA: 3'- gGCUGG--UGUa--UGUGGCGGGGCUGGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 11726 | 0.68 | 0.429482 |
Target: 5'- uCCGGCC-CGUGCggugacaucgagaauACCGCCCucguguucuaCGGCCAg -3' miRNA: 3'- -GGCUGGuGUAUG---------------UGGCGGG----------GCUGGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 3617 | 0.69 | 0.362631 |
Target: 5'- gCCGACa----GCAUCGUCaCCGGCCACg -3' miRNA: 3'- -GGCUGguguaUGUGGCGG-GGCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 30751 | 0.69 | 0.362631 |
Target: 5'- -aGACCAUcgGaACCGUCCUGGCCGa -3' miRNA: 3'- ggCUGGUGuaUgUGGCGGGGCUGGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 2647 | 0.69 | 0.354168 |
Target: 5'- --aACCugGc-CGCUGCCCUGGCCACg -3' miRNA: 3'- ggcUGGugUauGUGGCGGGGCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 24669 | 0.73 | 0.200157 |
Target: 5'- aUCGuCCGCAUGCACCGCCgcgucgucgagaccuUcauCGACCGCg -3' miRNA: 3'- -GGCuGGUGUAUGUGGCGG---------------G---GCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 4749 | 0.72 | 0.231863 |
Target: 5'- aCGuggucuuCCACc-ACACCGCCCUGGCCAa -3' miRNA: 3'- gGCu------GGUGuaUGUGGCGGGGCUGGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 4301 | 0.72 | 0.25053 |
Target: 5'- aCCGACCGCGagcaACGCCGUCUcuuCGACCuCa -3' miRNA: 3'- -GGCUGGUGUa---UGUGGCGGG---GCUGGuG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 38828 | 0.71 | 0.291561 |
Target: 5'- -gGACCugcugGCGUAcCugCGCCCCGAggcCCGCa -3' miRNA: 3'- ggCUGG-----UGUAU-GugGCGGGGCU---GGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 13494 | 0.71 | 0.298889 |
Target: 5'- aCCGacuGCCACAaggACACCGCCgCCGAggUCAa -3' miRNA: 3'- -GGC---UGGUGUa--UGUGGCGG-GGCU--GGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 25972 | 0.7 | 0.313973 |
Target: 5'- aCCuGCUGCAUACcgACCaGCCCUGGCCGa -3' miRNA: 3'- -GGcUGGUGUAUG--UGG-CGGGGCUGGUg -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 33661 | 0.69 | 0.35333 |
Target: 5'- gCGuCCGCGUAgACCcgaaccuGCCgCCGACCAUc -3' miRNA: 3'- gGCuGGUGUAUgUGG-------CGG-GGCUGGUG- -5' |
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22269 | 3' | -57.5 | NC_005045.1 | + | 40833 | 0.69 | 0.354168 |
Target: 5'- gCCGcGCCACugaggGCugCcaaGCCCUGGCCAUg -3' miRNA: 3'- -GGC-UGGUGua---UGugG---CGGGGCUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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