miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22269 3' -57.5 NC_005045.1 + 27966 1.12 0.000329
Target:  5'- gCCGACCACAUACACCGCCCCGACCACg -3'
miRNA:   3'- -GGCUGGUGUAUGUGGCGGGGCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 23198 0.75 0.159699
Target:  5'- cCCGGCUGCc-GCGCCGaCCCCGaACCAUg -3'
miRNA:   3'- -GGCUGGUGuaUGUGGC-GGGGC-UGGUG- -5'
22269 3' -57.5 NC_005045.1 + 16753 0.75 0.163653
Target:  5'- gCCGACCACGUugcccacgGCGCCGgggaacuUCCgGACCACc -3'
miRNA:   3'- -GGCUGGUGUA--------UGUGGC-------GGGgCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 24669 0.73 0.200157
Target:  5'- aUCGuCCGCAUGCACCGCCgcgucgucgagaccuUcauCGACCGCg -3'
miRNA:   3'- -GGCuGGUGUAUGUGGCGG---------------G---GCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 2495 0.73 0.22008
Target:  5'- aUGGCUuCAUACAgCGCCuuGACUACg -3'
miRNA:   3'- gGCUGGuGUAUGUgGCGGggCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 11613 0.73 0.225906
Target:  5'- cUCGGCCuGCuggGUACACCagaCCCGGCCACg -3'
miRNA:   3'- -GGCUGG-UG---UAUGUGGcg-GGGCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 4749 0.72 0.231863
Target:  5'- aCGuggucuuCCACc-ACACCGCCCUGGCCAa -3'
miRNA:   3'- gGCu------GGUGuaUGUGGCGGGGCUGGUg -5'
22269 3' -57.5 NC_005045.1 + 4301 0.72 0.25053
Target:  5'- aCCGACCGCGagcaACGCCGUCUcuuCGACCuCa -3'
miRNA:   3'- -GGCUGGUGUa---UGUGGCGGG---GCUGGuG- -5'
22269 3' -57.5 NC_005045.1 + 23432 0.71 0.27042
Target:  5'- uUGACCuGCGgcagGCACCGCCaCCGGCUg- -3'
miRNA:   3'- gGCUGG-UGUa---UGUGGCGG-GGCUGGug -5'
22269 3' -57.5 NC_005045.1 + 32720 0.71 0.277326
Target:  5'- gCUGGCa--GUGuCGCCGCCCUGcACCACa -3'
miRNA:   3'- -GGCUGgugUAU-GUGGCGGGGC-UGGUG- -5'
22269 3' -57.5 NC_005045.1 + 38828 0.71 0.291561
Target:  5'- -gGACCugcugGCGUAcCugCGCCCCGAggcCCGCa -3'
miRNA:   3'- ggCUGG-----UGUAU-GugGCGGGGCU---GGUG- -5'
22269 3' -57.5 NC_005045.1 + 13494 0.71 0.298889
Target:  5'- aCCGacuGCCACAaggACACCGCCgCCGAggUCAa -3'
miRNA:   3'- -GGC---UGGUGUa--UGUGGCGG-GGCU--GGUg -5'
22269 3' -57.5 NC_005045.1 + 25972 0.7 0.313973
Target:  5'- aCCuGCUGCAUACcgACCaGCCCUGGCCGa -3'
miRNA:   3'- -GGcUGGUGUAUG--UGG-CGGGGCUGGUg -5'
22269 3' -57.5 NC_005045.1 + 18127 0.7 0.313973
Target:  5'- gCgGGCguCGUucuGCGCCGCCCCGACa-- -3'
miRNA:   3'- -GgCUGguGUA---UGUGGCGGGGCUGgug -5'
22269 3' -57.5 NC_005045.1 + 34897 0.7 0.321728
Target:  5'- -gGGCCGCuucaucccccUGCGCCGCCCgCG-CCACc -3'
miRNA:   3'- ggCUGGUGu---------AUGUGGCGGG-GCuGGUG- -5'
22269 3' -57.5 NC_005045.1 + 33661 0.69 0.35333
Target:  5'- gCGuCCGCGUAgACCcgaaccuGCCgCCGACCAUc -3'
miRNA:   3'- gGCuGGUGUAUgUGG-------CGG-GGCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 2647 0.69 0.354168
Target:  5'- --aACCugGc-CGCUGCCCUGGCCACg -3'
miRNA:   3'- ggcUGGugUauGUGGCGGGGCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 40833 0.69 0.354168
Target:  5'- gCCGcGCCACugaggGCugCcaaGCCCUGGCCAUg -3'
miRNA:   3'- -GGC-UGGUGua---UGugG---CGGGGCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 3617 0.69 0.362631
Target:  5'- gCCGACa----GCAUCGUCaCCGGCCACg -3'
miRNA:   3'- -GGCUGguguaUGUGGCGG-GGCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 30751 0.69 0.362631
Target:  5'- -aGACCAUcgGaACCGUCCUGGCCGa -3'
miRNA:   3'- ggCUGGUGuaUgUGGCGGGGCUGGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.