miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22269 3' -57.5 NC_005045.1 + 27966 1.12 0.000329
Target:  5'- gCCGACCACAUACACCGCCCCGACCACg -3'
miRNA:   3'- -GGCUGGUGUAUGUGGCGGGGCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 12112 0.66 0.525991
Target:  5'- uCCGGCCAUcuucguacgGCACCcgGCCCUuguACCGCa -3'
miRNA:   3'- -GGCUGGUGua-------UGUGG--CGGGGc--UGGUG- -5'
22269 3' -57.5 NC_005045.1 + 28807 0.66 0.545045
Target:  5'- aCCGGCCACcagcggggacCGuuGCCCCG-CCGu -3'
miRNA:   3'- -GGCUGGUGuau-------GUggCGGGGCuGGUg -5'
22269 3' -57.5 NC_005045.1 + 31961 0.66 0.547176
Target:  5'- gUCGGCUGgAUACcuGCCGCCUgGAgCGCc -3'
miRNA:   3'- -GGCUGGUgUAUG--UGGCGGGgCUgGUG- -5'
22269 3' -57.5 NC_005045.1 + 23432 0.71 0.27042
Target:  5'- uUGACCuGCGgcagGCACCGCCaCCGGCUg- -3'
miRNA:   3'- gGCUGG-UGUa---UGUGGCGG-GGCUGGug -5'
22269 3' -57.5 NC_005045.1 + 32720 0.71 0.277326
Target:  5'- gCUGGCa--GUGuCGCCGCCCUGcACCACa -3'
miRNA:   3'- -GGCUGgugUAU-GUGGCGGGGC-UGGUG- -5'
22269 3' -57.5 NC_005045.1 + 34897 0.7 0.321728
Target:  5'- -gGGCCGCuucaucccccUGCGCCGCCCgCG-CCACc -3'
miRNA:   3'- ggCUGGUGu---------AUGUGGCGGG-GCuGGUG- -5'
22269 3' -57.5 NC_005045.1 + 15076 0.69 0.371233
Target:  5'- uUCGACgGCAgcgggaGCCGCCaCCGggGCCACc -3'
miRNA:   3'- -GGCUGgUGUaug---UGGCGG-GGC--UGGUG- -5'
22269 3' -57.5 NC_005045.1 + 28637 0.68 0.415349
Target:  5'- -gGGCCACcgcaucgacggAUGCACCcuugacgccgaacGCCCCGGCCu- -3'
miRNA:   3'- ggCUGGUG-----------UAUGUGG-------------CGGGGCUGGug -5'
22269 3' -57.5 NC_005045.1 + 38077 0.66 0.515514
Target:  5'- -aGACCAgaaccugcgccCAgGCGCUGCCCUcuGGCCGCc -3'
miRNA:   3'- ggCUGGU-----------GUaUGUGGCGGGG--CUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 10119 0.67 0.488688
Target:  5'- aCGAUCACGUACccguucuucuugaugAUgGCCUCGACgGCc -3'
miRNA:   3'- gGCUGGUGUAUG---------------UGgCGGGGCUGgUG- -5'
22269 3' -57.5 NC_005045.1 + 22533 0.68 0.407007
Target:  5'- aUCGACUACc-GCACCcuugGCCUCGuCCACg -3'
miRNA:   3'- -GGCUGGUGuaUGUGG----CGGGGCuGGUG- -5'
22269 3' -57.5 NC_005045.1 + 16753 0.75 0.163653
Target:  5'- gCCGACCACGUugcccacgGCGCCGgggaacuUCCgGACCACc -3'
miRNA:   3'- -GGCUGGUGUA--------UGUGGC-------GGGgCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 31045 0.67 0.494822
Target:  5'- gCUGACCuugACGUugGCACCguacucggcGCCCCGcAUCGCa -3'
miRNA:   3'- -GGCUGG---UGUA--UGUGG---------CGGGGC-UGGUG- -5'
22269 3' -57.5 NC_005045.1 + 2495 0.73 0.22008
Target:  5'- aUGGCUuCAUACAgCGCCuuGACUACg -3'
miRNA:   3'- gGCUGGuGUAUGUgGCGGggCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 6028 0.69 0.38885
Target:  5'- uCCGGuCCGCAaGCuuCCGUaCCCGGCUGCg -3'
miRNA:   3'- -GGCU-GGUGUaUGu-GGCG-GGGCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 41594 0.67 0.505122
Target:  5'- uCCGGugGgGUaGCGCCGCCCUcGCCGCc -3'
miRNA:   3'- -GGCUggUgUA-UGUGGCGGGGcUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 19244 0.66 0.536547
Target:  5'- aCGugCAUcgggaaGUACACUGCCuuG-CCAUg -3'
miRNA:   3'- gGCugGUG------UAUGUGGCGGggCuGGUG- -5'
22269 3' -57.5 NC_005045.1 + 11613 0.73 0.225906
Target:  5'- cUCGGCCuGCuggGUACACCagaCCCGGCCACg -3'
miRNA:   3'- -GGCUGG-UG---UAUGUGGcg-GGGCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 18127 0.7 0.313973
Target:  5'- gCgGGCguCGUucuGCGCCGCCCCGACa-- -3'
miRNA:   3'- -GgCUGguGUA---UGUGGCGGGGCUGgug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.