miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22269 3' -57.5 NC_005045.1 + 41594 0.67 0.505122
Target:  5'- uCCGGugGgGUaGCGCCGCCCUcGCCGCc -3'
miRNA:   3'- -GGCUggUgUA-UGUGGCGGGGcUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 41390 0.67 0.46452
Target:  5'- gCUGGCCGUA-ACACCGgCCUGACCu- -3'
miRNA:   3'- -GGCUGGUGUaUGUGGCgGGGCUGGug -5'
22269 3' -57.5 NC_005045.1 + 41191 0.68 0.439061
Target:  5'- aCCGGCCugugccugcuGCugucguugacagccuGUGCaACCGCCCCGGcgcCCGCu -3'
miRNA:   3'- -GGCUGG----------UG---------------UAUG-UGGCGGGGCU---GGUG- -5'
22269 3' -57.5 NC_005045.1 + 40833 0.69 0.354168
Target:  5'- gCCGcGCCACugaggGCugCcaaGCCCUGGCCAUg -3'
miRNA:   3'- -GGC-UGGUGua---UGugG---CGGGGCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 40081 0.66 0.515514
Target:  5'- aCCGACCGaggcuCACUGCCgaaggaCGACCGg -3'
miRNA:   3'- -GGCUGGUguau-GUGGCGGg-----GCUGGUg -5'
22269 3' -57.5 NC_005045.1 + 39948 0.68 0.416282
Target:  5'- gCGGCCcauCAUGCAgCGCCaCCGucugaucuuCCACg -3'
miRNA:   3'- gGCUGGu--GUAUGUgGCGG-GGCu--------GGUG- -5'
22269 3' -57.5 NC_005045.1 + 39265 0.66 0.514471
Target:  5'- -aGGCCACAacccgcGCACCggcaaggGCCUCGACgGCa -3'
miRNA:   3'- ggCUGGUGUa-----UGUGG-------CGGGGCUGgUG- -5'
22269 3' -57.5 NC_005045.1 + 38828 0.71 0.291561
Target:  5'- -gGACCugcugGCGUAcCugCGCCCCGAggcCCGCa -3'
miRNA:   3'- ggCUGG-----UGUAU-GugGCGGGGCU---GGUG- -5'
22269 3' -57.5 NC_005045.1 + 38077 0.66 0.515514
Target:  5'- -aGACCAgaaccugcgccCAgGCGCUGCCCUcuGGCCGCc -3'
miRNA:   3'- ggCUGGU-----------GUaUGUGGCGGGG--CUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 37377 0.66 0.568624
Target:  5'- aCCGcCUACuugaGCGCCGCCgCCGggACCGg -3'
miRNA:   3'- -GGCuGGUGua--UGUGGCGG-GGC--UGGUg -5'
22269 3' -57.5 NC_005045.1 + 34897 0.7 0.321728
Target:  5'- -gGGCCGCuucaucccccUGCGCCGCCCgCG-CCACc -3'
miRNA:   3'- ggCUGGUGu---------AUGUGGCGGG-GCuGGUG- -5'
22269 3' -57.5 NC_005045.1 + 33963 0.66 0.547176
Target:  5'- -gGGCUACcgGCAuCCGCUCCGAguUCAUg -3'
miRNA:   3'- ggCUGGUGuaUGU-GGCGGGGCU--GGUG- -5'
22269 3' -57.5 NC_005045.1 + 33661 0.69 0.35333
Target:  5'- gCGuCCGCGUAgACCcgaaccuGCCgCCGACCAUc -3'
miRNA:   3'- gGCuGGUGUAUgUGG-------CGG-GGCUGGUG- -5'
22269 3' -57.5 NC_005045.1 + 33142 0.68 0.407007
Target:  5'- uCCGGuCCGaugcugACACgGCCCUGAgCCGCg -3'
miRNA:   3'- -GGCU-GGUgua---UGUGgCGGGGCU-GGUG- -5'
22269 3' -57.5 NC_005045.1 + 32720 0.71 0.277326
Target:  5'- gCUGGCa--GUGuCGCCGCCCUGcACCACa -3'
miRNA:   3'- -GGCUGgugUAU-GUGGCGGGGC-UGGUG- -5'
22269 3' -57.5 NC_005045.1 + 31961 0.66 0.547176
Target:  5'- gUCGGCUGgAUACcuGCCGCCUgGAgCGCc -3'
miRNA:   3'- -GGCUGGUgUAUG--UGGCGGGgCUgGUG- -5'
22269 3' -57.5 NC_005045.1 + 31045 0.67 0.494822
Target:  5'- gCUGACCuugACGUugGCACCguacucggcGCCCCGcAUCGCa -3'
miRNA:   3'- -GGCUGG---UGUA--UGUGG---------CGGGGC-UGGUG- -5'
22269 3' -57.5 NC_005045.1 + 30751 0.69 0.362631
Target:  5'- -aGACCAUcgGaACCGUCCUGGCCGa -3'
miRNA:   3'- ggCUGGUGuaUgUGGCGGGGCUGGUg -5'
22269 3' -57.5 NC_005045.1 + 29495 0.66 0.547176
Target:  5'- gUGGCCugAgccUGCACaGCCuuGGCCAg -3'
miRNA:   3'- gGCUGGugU---AUGUGgCGGggCUGGUg -5'
22269 3' -57.5 NC_005045.1 + 28807 0.66 0.545045
Target:  5'- aCCGGCCACcagcggggacCGuuGCCCCG-CCGu -3'
miRNA:   3'- -GGCUGGUGuau-------GUggCGGGGCuGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.