miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22272 3' -58.5 NC_005045.1 + 24707 0.69 0.320503
Target:  5'- uGUCGGCAgcuugcuuggcggUCAGGCCGGUCAgguccaguuucuCCAGCa- -3'
miRNA:   3'- -CGGCUGU-------------AGUCUGGCCGGU------------GGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 34234 0.69 0.337087
Target:  5'- cGCCGGCAguaugUCGGGCCgcucagcauuGGCCcgcgcagguauGCCGGgGGa -3'
miRNA:   3'- -CGGCUGU-----AGUCUGG----------CCGG-----------UGGUCgCC- -5'
22272 3' -58.5 NC_005045.1 + 29638 0.69 0.345202
Target:  5'- cGCUGGuuCAUgucCAGGCUGGCCGCCAGg-- -3'
miRNA:   3'- -CGGCU--GUA---GUCUGGCCGGUGGUCgcc -5'
22272 3' -58.5 NC_005045.1 + 23852 0.68 0.369518
Target:  5'- cGCCGGCAgccugcuUCAGGaCGGCCucACCaccgacGGCGGc -3'
miRNA:   3'- -CGGCUGU-------AGUCUgGCCGG--UGG------UCGCC- -5'
22272 3' -58.5 NC_005045.1 + 8725 0.68 0.370377
Target:  5'- uUCGACc-CAGGCCGGCCcauCCuGUGGc -3'
miRNA:   3'- cGGCUGuaGUCUGGCCGGu--GGuCGCC- -5'
22272 3' -58.5 NC_005045.1 + 12932 0.68 0.378171
Target:  5'- uGCCaGGCgguacaagugcauGUCAGuGCCGGCCAUCAGUu- -3'
miRNA:   3'- -CGG-CUG-------------UAGUC-UGGCCGGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 33093 0.68 0.379043
Target:  5'- aUCGGguaucCGUCAGGCCccaGGCUACCAGCu- -3'
miRNA:   3'- cGGCU-----GUAGUCUGG---CCGGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 29693 0.68 0.387844
Target:  5'- cGCaGAC-UCGGGCUaaggaaucgauGGCCACCuuGCGGg -3'
miRNA:   3'- -CGgCUGuAGUCUGG-----------CCGGUGGu-CGCC- -5'
22272 3' -58.5 NC_005045.1 + 28538 0.68 0.387844
Target:  5'- cGCCGAgGcUCAGGCCggGGCguUCGGCGu -3'
miRNA:   3'- -CGGCUgU-AGUCUGG--CCGguGGUCGCc -5'
22272 3' -58.5 NC_005045.1 + 1247 0.68 0.387844
Target:  5'- uCUGGCAU-AGGCCcuuuugcugaguGGCCAUCAGUGGu -3'
miRNA:   3'- cGGCUGUAgUCUGG------------CCGGUGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 15159 0.68 0.388732
Target:  5'- cGCCGACGgccccgccuacguGGCugCGGCCACUAcGCGGa -3'
miRNA:   3'- -CGGCUGUagu----------CUG--GCCGGUGGU-CGCC- -5'
22272 3' -58.5 NC_005045.1 + 13244 0.68 0.394084
Target:  5'- uGCCGGCAUCuGGuccUCGGCCuuguacaugacgagGCUGGUGGc -3'
miRNA:   3'- -CGGCUGUAGuCU---GGCCGG--------------UGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 16168 0.68 0.396779
Target:  5'- cGCUGAUGUCgauGGGCUuGCCGCagAGCGGg -3'
miRNA:   3'- -CGGCUGUAG---UCUGGcCGGUGg-UCGCC- -5'
22272 3' -58.5 NC_005045.1 + 32925 0.68 0.396779
Target:  5'- cGCCcuGAaga-AGACCGcGCCGCCGGuCGGc -3'
miRNA:   3'- -CGG--CUguagUCUGGC-CGGUGGUC-GCC- -5'
22272 3' -58.5 NC_005045.1 + 13144 0.68 0.396779
Target:  5'- -gCGACAgugCAGA--GGCCACCAGCc- -3'
miRNA:   3'- cgGCUGUa--GUCUggCCGGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 23483 0.68 0.396779
Target:  5'- aGCCGGCGgagCuaccgGGGCCGGCUG--AGCGGg -3'
miRNA:   3'- -CGGCUGUa--G-----UCUGGCCGGUggUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 34407 0.68 0.403111
Target:  5'- uGCCGcgugaGCAcCAGcUCGGCCccguugcacagcggGCCAGCGGc -3'
miRNA:   3'- -CGGC-----UGUaGUCuGGCCGG--------------UGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 28780 0.68 0.409507
Target:  5'- cGCCGugGUacucuucugacccagCAGGCCGGCCuuaGCCugAGCcuGGa -3'
miRNA:   3'- -CGGCugUA---------------GUCUGGCCGG---UGG--UCG--CC- -5'
22272 3' -58.5 NC_005045.1 + 38994 0.67 0.412267
Target:  5'- -aCGACAUCGagaccacgaagaacGGCCucaccGCCACCgAGCGGg -3'
miRNA:   3'- cgGCUGUAGU--------------CUGGc----CGGUGG-UCGCC- -5'
22272 3' -58.5 NC_005045.1 + 4924 0.67 0.415039
Target:  5'- cGCCGGCGucuaUCAGguGCUGGuCCGCUucAGCGa -3'
miRNA:   3'- -CGGCUGU----AGUC--UGGCC-GGUGG--UCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.