miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22272 3' -58.5 NC_005045.1 + 28819 1.13 0.000209
Target:  5'- cGCCGACAUCAGACCGGCCACCAGCGGg -3'
miRNA:   3'- -CGGCUGUAGUCUGGCCGGUGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 5901 0.84 0.031949
Target:  5'- gGCgGACAgCGGGCCGGCCuucuucgauACCAGCGGg -3'
miRNA:   3'- -CGgCUGUaGUCUGGCCGG---------UGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 13028 0.76 0.12192
Target:  5'- aGCCuGCAUCAugcGACCGuGCCACgGGUGGu -3'
miRNA:   3'- -CGGcUGUAGU---CUGGC-CGGUGgUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 25921 0.74 0.155982
Target:  5'- uCCGAUcccguGUCAGGacuUCGGCgGCCAGCGGu -3'
miRNA:   3'- cGGCUG-----UAGUCU---GGCCGgUGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 27435 0.73 0.178441
Target:  5'- gGCCGGCugaguacaucCAGGCggCGGCCuCCAGCGGc -3'
miRNA:   3'- -CGGCUGua--------GUCUG--GCCGGuGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 29427 0.73 0.188202
Target:  5'- gGCCaaGGCugugCAGGCUcaGGCCACCGGCGa -3'
miRNA:   3'- -CGG--CUGua--GUCUGG--CCGGUGGUCGCc -5'
22272 3' -58.5 NC_005045.1 + 41473 0.73 0.193257
Target:  5'- gGCCGAUGUCaAGGCCaaGGCCACCGcuGUGa -3'
miRNA:   3'- -CGGCUGUAG-UCUGG--CCGGUGGU--CGCc -5'
22272 3' -58.5 NC_005045.1 + 23804 0.72 0.202123
Target:  5'- uGCCGGCGUCuucaaccaacacgcGGACCcugccaccaaGGCCGCCAuCGGu -3'
miRNA:   3'- -CGGCUGUAG--------------UCUGG----------CCGGUGGUcGCC- -5'
22272 3' -58.5 NC_005045.1 + 28387 0.72 0.226137
Target:  5'- uGuuGAagggCGGACauGCCGCCAGCGGc -3'
miRNA:   3'- -CggCUgua-GUCUGgcCGGUGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 33206 0.72 0.226137
Target:  5'- gGCCGugucaGCAUCGGACCGGagGcCCAGCaGGc -3'
miRNA:   3'- -CGGC-----UGUAGUCUGGCCggU-GGUCG-CC- -5'
22272 3' -58.5 NC_005045.1 + 41475 0.71 0.242421
Target:  5'- gGCUGGCAuaccugguagaaggUCAGGCCGGUguuacgGCCAGCGa -3'
miRNA:   3'- -CGGCUGU--------------AGUCUGGCCGg-----UGGUCGCc -5'
22272 3' -58.5 NC_005045.1 + 36409 0.71 0.244289
Target:  5'- aUgGugGUCAGcACCGGCUuggGCCGGCGa -3'
miRNA:   3'- cGgCugUAGUC-UGGCCGG---UGGUCGCc -5'
22272 3' -58.5 NC_005045.1 + 15932 0.71 0.246799
Target:  5'- aGUCGGCGUUcGGCgcauccacagcaccuCGGCCuccGCCAGCGGg -3'
miRNA:   3'- -CGGCUGUAGuCUG---------------GCCGG---UGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 33967 0.71 0.250604
Target:  5'- aUCGGCGUCAGcCCGGUCcagGCCAG-GGa -3'
miRNA:   3'- cGGCUGUAGUCuGGCCGG---UGGUCgCC- -5'
22272 3' -58.5 NC_005045.1 + 22066 0.71 0.257053
Target:  5'- cGCCGAgAUgcGACUGGCCGCUGGaUGGa -3'
miRNA:   3'- -CGGCUgUAguCUGGCCGGUGGUC-GCC- -5'
22272 3' -58.5 NC_005045.1 + 41249 0.7 0.284209
Target:  5'- aGCaGGCA-CAGGCCGGucagcCCACgGGCGGu -3'
miRNA:   3'- -CGgCUGUaGUCUGGCC-----GGUGgUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 8709 0.7 0.306031
Target:  5'- uGCCcGCAUCAGGaggCGcuGCCACCAGCa- -3'
miRNA:   3'- -CGGcUGUAGUCUg--GC--CGGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 25184 0.7 0.306031
Target:  5'- cGCCGAUAcccuUCAGuucgaUGG-CACCAGCGGu -3'
miRNA:   3'- -CGGCUGU----AGUCug---GCCgGUGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 15916 0.7 0.306031
Target:  5'- aGCCGAgAccuUCGu-CCGGCCuuccGCCAGUGGa -3'
miRNA:   3'- -CGGCUgU---AGUcuGGCCGG----UGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 4536 0.7 0.306031
Target:  5'- --gGACG-CGGACCGGUCACCuuGGCaGGg -3'
miRNA:   3'- cggCUGUaGUCUGGCCGGUGG--UCG-CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.