miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22272 3' -58.5 NC_005045.1 + 10709 0.66 0.472763
Target:  5'- uCCGGCAcCGuGGCC-GCCACCGGCc- -3'
miRNA:   3'- cGGCUGUaGU-CUGGcCGGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 13144 0.68 0.396779
Target:  5'- -gCGACAgugCAGA--GGCCACCAGCc- -3'
miRNA:   3'- cgGCUGUa--GUCUggCCGGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 32925 0.68 0.396779
Target:  5'- cGCCcuGAaga-AGACCGcGCCGCCGGuCGGc -3'
miRNA:   3'- -CGG--CUguagUCUGGC-CGGUGGUC-GCC- -5'
22272 3' -58.5 NC_005045.1 + 34407 0.68 0.403111
Target:  5'- uGCCGcgugaGCAcCAGcUCGGCCccguugcacagcggGCCAGCGGc -3'
miRNA:   3'- -CGGC-----UGUaGUCuGGCCGG--------------UGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 38994 0.67 0.412267
Target:  5'- -aCGACAUCGagaccacgaagaacGGCCucaccGCCACCgAGCGGg -3'
miRNA:   3'- cgGCUGUAGU--------------CUGGc----CGGUGG-UCGCC- -5'
22272 3' -58.5 NC_005045.1 + 4924 0.67 0.415039
Target:  5'- cGCCGGCGucuaUCAGguGCUGGuCCGCUucAGCGa -3'
miRNA:   3'- -CGGCUGU----AGUC--UGGCC-GGUGG--UCGCc -5'
22272 3' -58.5 NC_005045.1 + 5280 0.67 0.424361
Target:  5'- aGCCGACggCu--CCaGGCCGCCgAGCGc -3'
miRNA:   3'- -CGGCUGuaGucuGG-CCGGUGG-UCGCc -5'
22272 3' -58.5 NC_005045.1 + 35285 0.66 0.471767
Target:  5'- -aCGGCAUCGGcuacacuGCCGGCC-UCGGCu- -3'
miRNA:   3'- cgGCUGUAGUC-------UGGCCGGuGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 38855 0.66 0.472763
Target:  5'- gGCCcGCAUgGGugaccguaccUCGGCCACCAGCu- -3'
miRNA:   3'- -CGGcUGUAgUCu---------GGCCGGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 15159 0.68 0.388732
Target:  5'- cGCCGACGgccccgccuacguGGCugCGGCCACUAcGCGGa -3'
miRNA:   3'- -CGGCUGUagu----------CUG--GCCGGUGGU-CGCC- -5'
22272 3' -58.5 NC_005045.1 + 28538 0.68 0.387844
Target:  5'- cGCCGAgGcUCAGGCCggGGCguUCGGCGu -3'
miRNA:   3'- -CGGCUgU-AGUCUGG--CCGguGGUCGCc -5'
22272 3' -58.5 NC_005045.1 + 29693 0.68 0.387844
Target:  5'- cGCaGAC-UCGGGCUaaggaaucgauGGCCACCuuGCGGg -3'
miRNA:   3'- -CGgCUGuAGUCUGG-----------CCGGUGGu-CGCC- -5'
22272 3' -58.5 NC_005045.1 + 27435 0.73 0.178441
Target:  5'- gGCCGGCugaguacaucCAGGCggCGGCCuCCAGCGGc -3'
miRNA:   3'- -CGGCUGua--------GUCUG--GCCGGuGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 29427 0.73 0.188202
Target:  5'- gGCCaaGGCugugCAGGCUcaGGCCACCGGCGa -3'
miRNA:   3'- -CGG--CUGua--GUCUGG--CCGGUGGUCGCc -5'
22272 3' -58.5 NC_005045.1 + 41473 0.73 0.193257
Target:  5'- gGCCGAUGUCaAGGCCaaGGCCACCGcuGUGa -3'
miRNA:   3'- -CGGCUGUAG-UCUGG--CCGGUGGU--CGCc -5'
22272 3' -58.5 NC_005045.1 + 23804 0.72 0.202123
Target:  5'- uGCCGGCGUCuucaaccaacacgcGGACCcugccaccaaGGCCGCCAuCGGu -3'
miRNA:   3'- -CGGCUGUAG--------------UCUGG----------CCGGUGGUcGCC- -5'
22272 3' -58.5 NC_005045.1 + 22066 0.71 0.257053
Target:  5'- cGCCGAgAUgcGACUGGCCGCUGGaUGGa -3'
miRNA:   3'- -CGGCUgUAguCUGGCCGGUGGUC-GCC- -5'
22272 3' -58.5 NC_005045.1 + 15916 0.7 0.306031
Target:  5'- aGCCGAgAccuUCGu-CCGGCCuuccGCCAGUGGa -3'
miRNA:   3'- -CGGCUgU---AGUcuGGCCGG----UGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 34234 0.69 0.337087
Target:  5'- cGCCGGCAguaugUCGGGCCgcucagcauuGGCCcgcgcagguauGCCGGgGGa -3'
miRNA:   3'- -CGGCUGU-----AGUCUGG----------CCGG-----------UGGUCgCC- -5'
22272 3' -58.5 NC_005045.1 + 8725 0.68 0.370377
Target:  5'- uUCGACc-CAGGCCGGCCcauCCuGUGGc -3'
miRNA:   3'- cGGCUGuaGUCUGGCCGGu--GGuCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.