miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22272 3' -58.5 NC_005045.1 + 34234 0.69 0.337087
Target:  5'- cGCCGGCAguaugUCGGGCCgcucagcauuGGCCcgcgcagguauGCCGGgGGa -3'
miRNA:   3'- -CGGCUGU-----AGUCUGG----------CCGG-----------UGGUCgCC- -5'
22272 3' -58.5 NC_005045.1 + 8725 0.68 0.370377
Target:  5'- uUCGACc-CAGGCCGGCCcauCCuGUGGc -3'
miRNA:   3'- cGGCUGuaGUCUGGCCGGu--GGuCGCC- -5'
22272 3' -58.5 NC_005045.1 + 29693 0.68 0.387844
Target:  5'- cGCaGAC-UCGGGCUaaggaaucgauGGCCACCuuGCGGg -3'
miRNA:   3'- -CGgCUGuAGUCUGG-----------CCGGUGGu-CGCC- -5'
22272 3' -58.5 NC_005045.1 + 4536 0.7 0.306031
Target:  5'- --gGACG-CGGACCGGUCACCuuGGCaGGg -3'
miRNA:   3'- cggCUGUaGUCUGGCCGGUGG--UCG-CC- -5'
22272 3' -58.5 NC_005045.1 + 8709 0.7 0.306031
Target:  5'- uGCCcGCAUCAGGaggCGcuGCCACCAGCa- -3'
miRNA:   3'- -CGGcUGUAGUCUg--GC--CGGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 25184 0.7 0.306031
Target:  5'- cGCCGAUAcccuUCAGuucgaUGG-CACCAGCGGu -3'
miRNA:   3'- -CGGCUGU----AGUCug---GCCgGUGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 24707 0.69 0.320503
Target:  5'- uGUCGGCAgcuugcuuggcggUCAGGCCGGUCAgguccaguuucuCCAGCa- -3'
miRNA:   3'- -CGGCUGU-------------AGUCUGGCCGGU------------GGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 29638 0.69 0.345202
Target:  5'- cGCUGGuuCAUgucCAGGCUGGCCGCCAGg-- -3'
miRNA:   3'- -CGGCU--GUA---GUCUGGCCGGUGGUCgcc -5'
22272 3' -58.5 NC_005045.1 + 23852 0.68 0.369518
Target:  5'- cGCCGGCAgccugcuUCAGGaCGGCCucACCaccgacGGCGGc -3'
miRNA:   3'- -CGGCUGU-------AGUCUgGCCGG--UGG------UCGCC- -5'
22272 3' -58.5 NC_005045.1 + 12932 0.68 0.378171
Target:  5'- uGCCaGGCgguacaagugcauGUCAGuGCCGGCCAUCAGUu- -3'
miRNA:   3'- -CGG-CUG-------------UAGUC-UGGCCGGUGGUCGcc -5'
22272 3' -58.5 NC_005045.1 + 41249 0.7 0.284209
Target:  5'- aGCaGGCA-CAGGCCGGucagcCCACgGGCGGu -3'
miRNA:   3'- -CGgCUGUaGUCUGGCC-----GGUGgUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 33967 0.71 0.250604
Target:  5'- aUCGGCGUCAGcCCGGUCcagGCCAG-GGa -3'
miRNA:   3'- cGGCUGUAGUCuGGCCGG---UGGUCgCC- -5'
22272 3' -58.5 NC_005045.1 + 15932 0.71 0.246799
Target:  5'- aGUCGGCGUUcGGCgcauccacagcaccuCGGCCuccGCCAGCGGg -3'
miRNA:   3'- -CGGCUGUAGuCUG---------------GCCGG---UGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 36409 0.71 0.244289
Target:  5'- aUgGugGUCAGcACCGGCUuggGCCGGCGa -3'
miRNA:   3'- cGgCugUAGUC-UGGCCGG---UGGUCGCc -5'
22272 3' -58.5 NC_005045.1 + 41475 0.71 0.242421
Target:  5'- gGCUGGCAuaccugguagaaggUCAGGCCGGUguuacgGCCAGCGa -3'
miRNA:   3'- -CGGCUGU--------------AGUCUGGCCGg-----UGGUCGCc -5'
22272 3' -58.5 NC_005045.1 + 33206 0.72 0.226137
Target:  5'- gGCCGugucaGCAUCGGACCGGagGcCCAGCaGGc -3'
miRNA:   3'- -CGGC-----UGUAGUCUGGCCggU-GGUCG-CC- -5'
22272 3' -58.5 NC_005045.1 + 28387 0.72 0.226137
Target:  5'- uGuuGAagggCGGACauGCCGCCAGCGGc -3'
miRNA:   3'- -CggCUgua-GUCUGgcCGGUGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 13028 0.76 0.12192
Target:  5'- aGCCuGCAUCAugcGACCGuGCCACgGGUGGu -3'
miRNA:   3'- -CGGcUGUAGU---CUGGC-CGGUGgUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 5901 0.84 0.031949
Target:  5'- gGCgGACAgCGGGCCGGCCuucuucgauACCAGCGGg -3'
miRNA:   3'- -CGgCUGUaGUCUGGCCGG---------UGGUCGCC- -5'
22272 3' -58.5 NC_005045.1 + 26244 0.66 0.503104
Target:  5'- gGuuGGCGaugaaCAGGucaUCGGCCACCguGGCGGc -3'
miRNA:   3'- -CggCUGUa----GUCU---GGCCGGUGG--UCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.