miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22275 3' -55 NC_005045.1 + 31354 1.1 0.000516
Target:  5'- cAUACCGGCCAAUCCCAGGAUAGAGGCa -3'
miRNA:   3'- -UAUGGCCGGUUAGGGUCCUAUCUCCG- -5'
22275 3' -55 NC_005045.1 + 18002 0.74 0.238351
Target:  5'- --uUCGGCCAgggugaccgccuGUUCCAGGGUGGcGGCg -3'
miRNA:   3'- uauGGCCGGU------------UAGGGUCCUAUCuCCG- -5'
22275 3' -55 NC_005045.1 + 34529 0.72 0.294302
Target:  5'- -cGCCGGagAAUCCCAGcAUGGuGGCg -3'
miRNA:   3'- uaUGGCCggUUAGGGUCcUAUCuCCG- -5'
22275 3' -55 NC_005045.1 + 29103 0.71 0.325912
Target:  5'- cGUACUGGCCAAaCCauucgugaAGGGUGGuuGGCg -3'
miRNA:   3'- -UAUGGCCGGUUaGGg-------UCCUAUCu-CCG- -5'
22275 3' -55 NC_005045.1 + 28754 0.71 0.342638
Target:  5'- -gGCCGGCCuuagCCUgagccuGGAUGGAGuGCg -3'
miRNA:   3'- uaUGGCCGGuua-GGGu-----CCUAUCUC-CG- -5'
22275 3' -55 NC_005045.1 + 20274 0.7 0.396443
Target:  5'- -gGgCGGUCAGUCCCAGG-UGGcugcuguccAGGCc -3'
miRNA:   3'- uaUgGCCGGUUAGGGUCCuAUC---------UCCG- -5'
22275 3' -55 NC_005045.1 + 8734 0.69 0.452334
Target:  5'- -gGCCGGCCcAUCCUguggcugaacaacgAGGGUaagGGAcGGCg -3'
miRNA:   3'- uaUGGCCGGuUAGGG--------------UCCUA---UCU-CCG- -5'
22275 3' -55 NC_005045.1 + 13055 0.69 0.465675
Target:  5'- -cACCGGCUGuaCCguGGA-AGAGGCc -3'
miRNA:   3'- uaUGGCCGGUuaGGguCCUaUCUCCG- -5'
22275 3' -55 NC_005045.1 + 42186 0.68 0.476075
Target:  5'- -aGCCGGaaGcUCCCAGGAggcuAGGCa -3'
miRNA:   3'- uaUGGCCggUuAGGGUCCUauc-UCCG- -5'
22275 3' -55 NC_005045.1 + 123 0.68 0.476075
Target:  5'- -aGCCGGaaGcUCCCAGGAggcuAGGCa -3'
miRNA:   3'- uaUGGCCggUuAGGGUCCUauc-UCCG- -5'
22275 3' -55 NC_005045.1 + 5195 0.68 0.476075
Target:  5'- --uCCGGCgGuuaCCCAGGAgcUGGAGGa -3'
miRNA:   3'- uauGGCCGgUua-GGGUCCU--AUCUCCg -5'
22275 3' -55 NC_005045.1 + 27096 0.68 0.506862
Target:  5'- uUGCUGGCCGAcaugcagacguacUCCugcgaCAGGAggacGAGGCg -3'
miRNA:   3'- uAUGGCCGGUU-------------AGG-----GUCCUau--CUCCG- -5'
22275 3' -55 NC_005045.1 + 33908 0.68 0.507939
Target:  5'- -gGCgGGCCAG-CCCAGGGgc--GGCc -3'
miRNA:   3'- uaUGgCCGGUUaGGGUCCUaucuCCG- -5'
22275 3' -55 NC_005045.1 + 40546 0.68 0.507939
Target:  5'- -cGCCGGCCuugucgCCCuGGA---AGGCa -3'
miRNA:   3'- uaUGGCCGGuua---GGGuCCUaucUCCG- -5'
22275 3' -55 NC_005045.1 + 37055 0.68 0.518761
Target:  5'- ----aGGCCAGUCCCuGGcc-GAGGUa -3'
miRNA:   3'- uauggCCGGUUAGGGuCCuauCUCCG- -5'
22275 3' -55 NC_005045.1 + 4767 0.67 0.548413
Target:  5'- -gGCCGGCUucuugaucagcuugGcgCCCGGGGUAGcagcGGUg -3'
miRNA:   3'- uaUGGCCGG--------------UuaGGGUCCUAUCu---CCG- -5'
22275 3' -55 NC_005045.1 + 23482 0.67 0.562881
Target:  5'- -cGCCGGCCuucacUCCCAacGGggAGAucguaGGCa -3'
miRNA:   3'- uaUGGCCGGuu---AGGGU--CCuaUCU-----CCG- -5'
22275 3' -55 NC_005045.1 + 11590 0.67 0.57408
Target:  5'- --cCCGGCCAcgcGUCgCAGGA---AGGCc -3'
miRNA:   3'- uauGGCCGGU---UAGgGUCCUaucUCCG- -5'
22275 3' -55 NC_005045.1 + 5842 0.67 0.585329
Target:  5'- -gGCCGGCCcgcuGUCCgccaAGGAcuucGAGGUa -3'
miRNA:   3'- uaUGGCCGGu---UAGGg---UCCUau--CUCCG- -5'
22275 3' -55 NC_005045.1 + 19590 0.66 0.59662
Target:  5'- cUACuCGGCUAuUCuCCGGGAcgAGAucGGCg -3'
miRNA:   3'- uAUG-GCCGGUuAG-GGUCCUa-UCU--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.