Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22275 | 3' | -55 | NC_005045.1 | + | 18748 | 0.66 | 0.603411 |
Target: 5'- --uCCGGCCAGggccgcCCCAGGucauugccgccgAGGGGUc -3' miRNA: 3'- uauGGCCGGUUa-----GGGUCCua----------UCUCCG- -5' |
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22275 | 3' | -55 | NC_005045.1 | + | 12908 | 0.66 | 0.607943 |
Target: 5'- aGUGCCGGCCAucaguuUCgCCAGGA----GGUu -3' miRNA: 3'- -UAUGGCCGGUu-----AG-GGUCCUaucuCCG- -5' |
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22275 | 3' | -55 | NC_005045.1 | + | 26863 | 0.66 | 0.607943 |
Target: 5'- -cACUGGCCcugCgCUGGGAU-GAGGCu -3' miRNA: 3'- uaUGGCCGGuuaG-GGUCCUAuCUCCG- -5' |
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22275 | 3' | -55 | NC_005045.1 | + | 31077 | 0.66 | 0.630646 |
Target: 5'- -aACUGGCuCAGUUCgAGGcuuaccgaggGGAGGCg -3' miRNA: 3'- uaUGGCCG-GUUAGGgUCCua--------UCUCCG- -5' |
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22275 | 3' | -55 | NC_005045.1 | + | 7962 | 0.66 | 0.642005 |
Target: 5'- --cCCGGCagguGUCCguGGuaguGAGGCg -3' miRNA: 3'- uauGGCCGgu--UAGGguCCuau-CUCCG- -5' |
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22275 | 3' | -55 | NC_005045.1 | + | 32460 | 0.66 | 0.642005 |
Target: 5'- gAUACCGGCC-AUCCCGcGAcguGAcacGGCc -3' miRNA: 3'- -UAUGGCCGGuUAGGGUcCUau-CU---CCG- -5' |
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22275 | 3' | -55 | NC_005045.1 | + | 39171 | 0.65 | 0.653355 |
Target: 5'- -gGCCgGGCCGGUUCCcgacccuGGAcgAGcAGGCg -3' miRNA: 3'- uaUGG-CCGGUUAGGGu------CCUa-UC-UCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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