miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22277 5' -56.1 NC_005045.1 + 33177 1.12 0.000355
Target:  5'- gCAGGCUGCGGAUACCCUCCACGAAGCg -3'
miRNA:   3'- -GUCCGACGCCUAUGGGAGGUGCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 8401 0.81 0.065919
Target:  5'- uCAGGCaggGUGGAUGCCCUCCugGc-GCa -3'
miRNA:   3'- -GUCCGa--CGCCUAUGGGAGGugCuuCG- -5'
22277 5' -56.1 NC_005045.1 + 5025 0.78 0.111179
Target:  5'- cCAGGCUGCa---ACCCUCgACGAAGCc -3'
miRNA:   3'- -GUCCGACGccuaUGGGAGgUGCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 30093 0.75 0.174433
Target:  5'- gCAGGCcgagcUGCG--UACCCUgCACGAGGCg -3'
miRNA:   3'- -GUCCG-----ACGCcuAUGGGAgGUGCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 6147 0.74 0.189406
Target:  5'- -cGGCgUGCGGuAUACCUUCCGCGcuuccguGGCg -3'
miRNA:   3'- guCCG-ACGCC-UAUGGGAGGUGCu------UCG- -5'
22277 5' -56.1 NC_005045.1 + 39376 0.73 0.247672
Target:  5'- gUAGcGCUGCGGGUcagccGCCCagCCACGGGuGCc -3'
miRNA:   3'- -GUC-CGACGCCUA-----UGGGa-GGUGCUU-CG- -5'
22277 5' -56.1 NC_005045.1 + 24960 0.72 0.254251
Target:  5'- uGGGCUGC-GAUugCCUuggUgGCGAAGCg -3'
miRNA:   3'- gUCCGACGcCUAugGGA---GgUGCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 23437 0.72 0.254251
Target:  5'- -cGGCUGCGGGUGcaguucuuCCCgagaaCCugGAAGUc -3'
miRNA:   3'- guCCGACGCCUAU--------GGGa----GGugCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 35372 0.71 0.304364
Target:  5'- uCGGGCUgGCGGAgca-CUCCaACGAGGUg -3'
miRNA:   3'- -GUCCGA-CGCCUauggGAGG-UGCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 32114 0.7 0.343754
Target:  5'- aGGGCUGcCGGGUccagcauACCagCCGCGAAGUu -3'
miRNA:   3'- gUCCGAC-GCCUA-------UGGgaGGUGCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 30698 0.7 0.379437
Target:  5'- uCAGGUUGCGGcccucGCCCaCCugGAugguGCg -3'
miRNA:   3'- -GUCCGACGCCua---UGGGaGGugCUu---CG- -5'
22277 5' -56.1 NC_005045.1 + 10462 0.69 0.407073
Target:  5'- gAGGCUGCGGAccauggcgcgGCgCUCaucguaCACGAGGUg -3'
miRNA:   3'- gUCCGACGCCUa---------UGgGAG------GUGCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 12133 0.69 0.407073
Target:  5'- uCAG--UGCGGGU-CCCgaUCCACGAAGUg -3'
miRNA:   3'- -GUCcgACGCCUAuGGG--AGGUGCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 5655 0.69 0.416562
Target:  5'- aUAGGCguggGCGaAUGCCCggcucuuggCCACGcGGCg -3'
miRNA:   3'- -GUCCGa---CGCcUAUGGGa--------GGUGCuUCG- -5'
22277 5' -56.1 NC_005045.1 + 7029 0.68 0.435938
Target:  5'- uGGGCU--GGAgcaccACCCaCCGCGAGGCg -3'
miRNA:   3'- gUCCGAcgCCUa----UGGGaGGUGCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 33031 0.68 0.455824
Target:  5'- gGGGcCUGaCGGAUACCCgauUCCA-GAGGa -3'
miRNA:   3'- gUCC-GAC-GCCUAUGGG---AGGUgCUUCg -5'
22277 5' -56.1 NC_005045.1 + 35323 0.68 0.455824
Target:  5'- -uGGCcaucuUGCGGAUGCCUUCguCaGAGGUg -3'
miRNA:   3'- guCCG-----ACGCCUAUGGGAGguG-CUUCG- -5'
22277 5' -56.1 NC_005045.1 + 34645 0.68 0.465948
Target:  5'- cCGGGUUGCGGcgcaugGCCC-CaACGAAGUc -3'
miRNA:   3'- -GUCCGACGCCua----UGGGaGgUGCUUCG- -5'
22277 5' -56.1 NC_005045.1 + 33911 0.68 0.476188
Target:  5'- cCGGGCUGaCGccGAUACCaUCCAC-AGGCc -3'
miRNA:   3'- -GUCCGAC-GC--CUAUGGgAGGUGcUUCG- -5'
22277 5' -56.1 NC_005045.1 + 23962 0.67 0.496994
Target:  5'- gGGuGCUGCGGcaccUGCCCuggcagcucugUCCGCuGAGCa -3'
miRNA:   3'- gUC-CGACGCCu---AUGGG-----------AGGUGcUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.