Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22277 | 5' | -56.1 | NC_005045.1 | + | 31 | 0.66 | 0.561606 |
Target: 5'- gUAGGCccucgucugGUGGGccacugccUAgCCUCCugGGAGCu -3' miRNA: 3'- -GUCCGa--------CGCCU--------AUgGGAGGugCUUCG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 5025 | 0.78 | 0.111179 |
Target: 5'- cCAGGCUGCa---ACCCUCgACGAAGCc -3' miRNA: 3'- -GUCCGACGccuaUGGGAGgUGCUUCG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 5655 | 0.69 | 0.416562 |
Target: 5'- aUAGGCguggGCGaAUGCCCggcucuuggCCACGcGGCg -3' miRNA: 3'- -GUCCGa---CGCcUAUGGGa--------GGUGCuUCG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 6147 | 0.74 | 0.189406 |
Target: 5'- -cGGCgUGCGGuAUACCUUCCGCGcuuccguGGCg -3' miRNA: 3'- guCCG-ACGCC-UAUGGGAGGUGCu------UCG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 7029 | 0.68 | 0.435938 |
Target: 5'- uGGGCU--GGAgcaccACCCaCCGCGAGGCg -3' miRNA: 3'- gUCCGAcgCCUa----UGGGaGGUGCUUCG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 7739 | 0.66 | 0.605941 |
Target: 5'- uGGGCUaCGGGUAUCCUgccccggauuaCCAUGGauGGCc -3' miRNA: 3'- gUCCGAcGCCUAUGGGA-----------GGUGCU--UCG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 8401 | 0.81 | 0.065919 |
Target: 5'- uCAGGCaggGUGGAUGCCCUCCugGc-GCa -3' miRNA: 3'- -GUCCGa--CGCCUAUGGGAGGugCuuCG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 8670 | 0.66 | 0.605941 |
Target: 5'- -cGGC-GUGGAgGCCCUUCAUGuacgccGGCa -3' miRNA: 3'- guCCGaCGCCUaUGGGAGGUGCu-----UCG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 10462 | 0.69 | 0.407073 |
Target: 5'- gAGGCUGCGGAccauggcgcgGCgCUCaucguaCACGAGGUg -3' miRNA: 3'- gUCCGACGCCUa---------UGgGAG------GUGCUUCG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 12133 | 0.69 | 0.407073 |
Target: 5'- uCAG--UGCGGGU-CCCgaUCCACGAAGUg -3' miRNA: 3'- -GUCcgACGCCUAuGGG--AGGUGCUUCG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 14652 | 0.66 | 0.58369 |
Target: 5'- aAGGaaucCUG-GGAUGCCCUCUucauCGAAGg -3' miRNA: 3'- gUCC----GACgCCUAUGGGAGGu---GCUUCg -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 20097 | 0.66 | 0.580366 |
Target: 5'- -cGGCUGCGGGccgaggcugucgagUACgucaCUCUguACGAGGCc -3' miRNA: 3'- guCCGACGCCU--------------AUGg---GAGG--UGCUUCG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 23437 | 0.72 | 0.254251 |
Target: 5'- -cGGCUGCGGGUGcaguucuuCCCgagaaCCugGAAGUc -3' miRNA: 3'- guCCGACGCCUAU--------GGGa----GGugCUUCG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 23962 | 0.67 | 0.496994 |
Target: 5'- gGGuGCUGCGGcaccUGCCCuggcagcucugUCCGCuGAGCa -3' miRNA: 3'- gUC-CGACGCCu---AUGGG-----------AGGUGcUUCG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 24960 | 0.72 | 0.254251 |
Target: 5'- uGGGCUGC-GAUugCCUuggUgGCGAAGCg -3' miRNA: 3'- gUCCGACGcCUAugGGA---GgUGCUUCG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 25188 | 0.66 | 0.561606 |
Target: 5'- aAGGC-GCcGAUACCCUUCAguuCGAuGGCa -3' miRNA: 3'- gUCCGaCGcCUAUGGGAGGU---GCU-UCG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 30093 | 0.75 | 0.174433 |
Target: 5'- gCAGGCcgagcUGCG--UACCCUgCACGAGGCg -3' miRNA: 3'- -GUCCG-----ACGCcuAUGGGAgGUGCUUCG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 30698 | 0.7 | 0.379437 |
Target: 5'- uCAGGUUGCGGcccucGCCCaCCugGAugguGCg -3' miRNA: 3'- -GUCCGACGCCua---UGGGaGGugCUu---CG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 32114 | 0.7 | 0.343754 |
Target: 5'- aGGGCUGcCGGGUccagcauACCagCCGCGAAGUu -3' miRNA: 3'- gUCCGAC-GCCUA-------UGGgaGGUGCUUCG- -5' |
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22277 | 5' | -56.1 | NC_005045.1 | + | 32773 | 0.66 | 0.605941 |
Target: 5'- gUAGGCaccaaccCGGugACCgugCUCCACGAAGCg -3' miRNA: 3'- -GUCCGac-----GCCuaUGG---GAGGUGCUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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