Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22280 | 5' | -52 | NC_005045.1 | + | 35338 | 0.67 | 0.766266 |
Target: 5'- aGCCgaugCCGUCgauGGCCAUCUUGcGGa -3' miRNA: 3'- -CGGaguaGGUAGac-UCGGUAGAAC-CU- -5' |
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22280 | 5' | -52 | NC_005045.1 | + | 33889 | 1.11 | 0.001028 |
Target: 5'- gGCCUCAUCCAUCUGAGCCAUCUUGGAc -3' miRNA: 3'- -CGGAGUAGGUAGACUCGGUAGAACCU- -5' |
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22280 | 5' | -52 | NC_005045.1 | + | 29535 | 0.66 | 0.776856 |
Target: 5'- gGCCUCuUCCAggCUGAGCUG-CcgGGAc -3' miRNA: 3'- -CGGAGuAGGUa-GACUCGGUaGaaCCU- -5' |
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22280 | 5' | -52 | NC_005045.1 | + | 26929 | 0.67 | 0.766266 |
Target: 5'- aGCCUCAUCCcagCgcaGGGCCAg--UGGc -3' miRNA: 3'- -CGGAGUAGGua-Ga--CUCGGUagaACCu -5' |
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22280 | 5' | -52 | NC_005045.1 | + | 18617 | 0.66 | 0.797528 |
Target: 5'- gGCaCgagCGUCCAcCUgGAGCCGUCgccGGAg -3' miRNA: 3'- -CG-Ga--GUAGGUaGA-CUCGGUAGaa-CCU- -5' |
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22280 | 5' | -52 | NC_005045.1 | + | 15845 | 0.7 | 0.596496 |
Target: 5'- gGCCUCGUCC-UCguccGUCAUCgggUGGAg -3' miRNA: 3'- -CGGAGUAGGuAGacu-CGGUAGa--ACCU- -5' |
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22280 | 5' | -52 | NC_005045.1 | + | 14233 | 0.66 | 0.776856 |
Target: 5'- cGCCUCAaaUCCGcCUGGGCU-UCgcacugUGGGg -3' miRNA: 3'- -CGGAGU--AGGUaGACUCGGuAGa-----ACCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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