miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22282 3' -56.1 NC_005045.1 + 10116 0.66 0.596741
Target:  5'- -cGCaUGGCGUGGUg-UCCcgCAGCgGg -3'
miRNA:   3'- gaCG-GCCGCAUCAagAGGuaGUCGgC- -5'
22282 3' -56.1 NC_005045.1 + 10429 0.66 0.595628
Target:  5'- uUGCCGGCGgGGcgacaccccguacUUCuUCCAggUAGCCGc -3'
miRNA:   3'- gACGGCCGCaUC-------------AAG-AGGUa-GUCGGC- -5'
22282 3' -56.1 NC_005045.1 + 6106 0.66 0.584524
Target:  5'- -gGCCGGCcc-GUUgaccuacCUCCAcCAGCCGg -3'
miRNA:   3'- gaCGGCCGcauCAA-------GAGGUaGUCGGC- -5'
22282 3' -56.1 NC_005045.1 + 148 0.67 0.541688
Target:  5'- cCUGCggUGGCGUGGcugC-CCAUCGGCUc -3'
miRNA:   3'- -GACG--GCCGCAUCaa-GaGGUAGUCGGc -5'
22282 3' -56.1 NC_005045.1 + 42211 0.67 0.541688
Target:  5'- cCUGCggUGGCGUGGcugC-CCAUCGGCUc -3'
miRNA:   3'- -GACG--GCCGCAUCaa-GaGGUAGUCGGc -5'
22282 3' -56.1 NC_005045.1 + 40066 0.67 0.519049
Target:  5'- aCUGCUGGCaggacacGUGGUcggaaUCCAUC-GCCGa -3'
miRNA:   3'- -GACGGCCG-------CAUCAag---AGGUAGuCGGC- -5'
22282 3' -56.1 NC_005045.1 + 23531 0.67 0.496794
Target:  5'- -gGCCGGCGgcggcgggacuuccaGGUUCUcgggaagaacugcaCCcgCAGCCGg -3'
miRNA:   3'- gaCGGCCGCa--------------UCAAGA--------------GGuaGUCGGC- -5'
22282 3' -56.1 NC_005045.1 + 21570 0.68 0.488428
Target:  5'- gUGCCGGUGcAGUgg--CAUCGGCCa -3'
miRNA:   3'- gACGGCCGCaUCAagagGUAGUCGGc -5'
22282 3' -56.1 NC_005045.1 + 22292 0.68 0.478065
Target:  5'- -aGCuCGGCGUA---CUCCAUC-GCCGu -3'
miRNA:   3'- gaCG-GCCGCAUcaaGAGGUAGuCGGC- -5'
22282 3' -56.1 NC_005045.1 + 8598 0.7 0.362516
Target:  5'- gCUGCCGGCGUacaugaaGGgcCUCCAc--GCCGg -3'
miRNA:   3'- -GACGGCCGCA-------UCaaGAGGUaguCGGC- -5'
22282 3' -56.1 NC_005045.1 + 30256 0.75 0.170676
Target:  5'- uUGCCGGCGgaggGGUugaUCUCC-UgGGCCGa -3'
miRNA:   3'- gACGGCCGCa---UCA---AGAGGuAgUCGGC- -5'
22282 3' -56.1 NC_005045.1 + 34285 1.1 0.000486
Target:  5'- aCUGCCGGCGUAGUUCUCCAUCAGCCGg -3'
miRNA:   3'- -GACGGCCGCAUCAAGAGGUAGUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.