Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22285 | 3' | -64.8 | NC_005045.1 | + | 31599 | 0.66 | 0.218691 |
Target: 5'- aGGCCCaaguacAGGGCcaacuCGaCGCGGUGCCUa- -3' miRNA: 3'- -UCGGG------UCCCGu----GCcGCGUCGCGGAgu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 9049 | 0.66 | 0.218691 |
Target: 5'- uGGCCgAGGuccGCgagAUGGCGguGCGCCa-- -3' miRNA: 3'- -UCGGgUCC---CG---UGCCGCguCGCGGagu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 17896 | 0.66 | 0.218131 |
Target: 5'- cAGCCuccucgguCAGGGCcaccuCGGCgGCGGCcauugcauugaacGCCUCAu -3' miRNA: 3'- -UCGG--------GUCCCGu----GCCG-CGUCG-------------CGGAGU- -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 18779 | 0.66 | 0.213149 |
Target: 5'- -uUCCAGGGuCGCGGCG--GCGCCa-- -3' miRNA: 3'- ucGGGUCCC-GUGCCGCguCGCGGagu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 16750 | 0.66 | 0.213149 |
Target: 5'- cGCCUaucgAGGGCugGGUGUGGuCGCuCUgGa -3' miRNA: 3'- uCGGG----UCCCGugCCGCGUC-GCG-GAgU- -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 40175 | 0.66 | 0.202428 |
Target: 5'- aGGCCCucaAGGGCAucgaucCGGUcguccuucgGCAGUgaGCCUCGg -3' miRNA: 3'- -UCGGG---UCCCGU------GCCG---------CGUCG--CGGAGU- -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 36961 | 0.66 | 0.202428 |
Target: 5'- gGGaCCGGGGUACGGuUGCcGGUGCCg-- -3' miRNA: 3'- -UCgGGUCCCGUGCC-GCG-UCGCGGagu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 18051 | 0.66 | 0.202428 |
Target: 5'- aGGCCCuugucGGgGCGGCGCAGaacgaCGCCcgCAu -3' miRNA: 3'- -UCGGGuc---CCgUGCCGCGUC-----GCGGa-GU- -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 27382 | 0.66 | 0.197245 |
Target: 5'- -aCCCAGGGCACGcucCGCAGCGa---- -3' miRNA: 3'- ucGGGUCCCGUGCc--GCGUCGCggagu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 24007 | 0.67 | 0.182385 |
Target: 5'- -aCCCAGGGguUGGC-CGGCuGCCUg- -3' miRNA: 3'- ucGGGUCCCguGCCGcGUCG-CGGAgu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 34649 | 0.67 | 0.182385 |
Target: 5'- aGGUCCGGGuuGCGGCGCAugGCCcCAa -3' miRNA: 3'- -UCGGGUCCcgUGCCGCGUcgCGGaGU- -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 17981 | 0.67 | 0.182385 |
Target: 5'- -uUCCAGGGUgGCGGCGCGguauucGCGCCa-- -3' miRNA: 3'- ucGGGUCCCG-UGCCGCGU------CGCGGagu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 33442 | 0.67 | 0.177657 |
Target: 5'- cGGCCCAGGa---GGCGCcguGCGcCCUCu -3' miRNA: 3'- -UCGGGUCCcgugCCGCGu--CGC-GGAGu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 10575 | 0.67 | 0.170317 |
Target: 5'- aAGCCCAuGGCGCGGUgguagccguaccagcGUAGUaccGCCUCc -3' miRNA: 3'- -UCGGGUcCCGUGCCG---------------CGUCG---CGGAGu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 8547 | 0.67 | 0.159816 |
Target: 5'- -cCCCu---CACGGCGCAGgGCCUCGu -3' miRNA: 3'- ucGGGucccGUGCCGCGUCgCGGAGU- -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 4744 | 0.68 | 0.143608 |
Target: 5'- cGCCCGGGGUagcaGCGGUGguG-GUUUCGg -3' miRNA: 3'- uCGGGUCCCG----UGCCGCguCgCGGAGU- -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 13629 | 0.68 | 0.132453 |
Target: 5'- uAGCCCAGGcGCucgcucauguaGCGG-GCAGCGUCg-- -3' miRNA: 3'- -UCGGGUCC-CG-----------UGCCgCGUCGCGGagu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 41518 | 0.69 | 0.128916 |
Target: 5'- uGCCCuGGGCgGCGaGgGCGGCGCUa-- -3' miRNA: 3'- uCGGGuCCCG-UGC-CgCGUCGCGGagu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 18896 | 0.69 | 0.122102 |
Target: 5'- uGGCCCAGGugGCGGaGCuGCGCCUg- -3' miRNA: 3'- -UCGGGUCCcgUGCCgCGuCGCGGAgu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 41215 | 0.69 | 0.12177 |
Target: 5'- uGGUCCAGGGCACGGUcCaccuccuGGCGCUg-- -3' miRNA: 3'- -UCGGGUCCCGUGCCGcG-------UCGCGGagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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