Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22285 | 3' | -64.8 | NC_005045.1 | + | 36023 | 1.07 | 0.000099 |
Target: 5'- aAGCCCAGGGCACGGCGCAGCGCCUCAu -3' miRNA: 3'- -UCGGGUCCCGUGCCGCGUCGCGGAGU- -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 10205 | 0.74 | 0.046007 |
Target: 5'- cGUCCAGGGCAgGGaaGCGGCGCC-CGc -3' miRNA: 3'- uCGGGUCCCGUgCCg-CGUCGCGGaGU- -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 30308 | 0.74 | 0.048692 |
Target: 5'- cGCCCAGGcCACGGCGCccuGCucgGCCUCc -3' miRNA: 3'- uCGGGUCCcGUGCCGCGu--CG---CGGAGu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 7371 | 0.73 | 0.057694 |
Target: 5'- uAG-CCAGGaGuCACGGCGCAGUGCCa-- -3' miRNA: 3'- -UCgGGUCC-C-GUGCCGCGUCGCGGagu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 32160 | 0.73 | 0.06278 |
Target: 5'- gAGCCgCAGaGCACGGC-CAGCGCCg-- -3' miRNA: 3'- -UCGG-GUCcCGUGCCGcGUCGCGGagu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 41569 | 0.71 | 0.085152 |
Target: 5'- cGCCCAGGGCAgUGGCugcugcgaucacaGCGGUgGCCUUg -3' miRNA: 3'- uCGGGUCCCGU-GCCG-------------CGUCG-CGGAGu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 8616 | 0.71 | 0.089762 |
Target: 5'- gGGCCUccacgccGGGGCcuCGGUgcuggugGCAGCGCCUCc -3' miRNA: 3'- -UCGGG-------UCCCGu-GCCG-------CGUCGCGGAGu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 40511 | 0.71 | 0.090261 |
Target: 5'- aAGCCCcu-GCGCGGCGCAGC-CCUg- -3' miRNA: 3'- -UCGGGuccCGUGCCGCGUCGcGGAgu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 23266 | 0.71 | 0.090261 |
Target: 5'- uGGUUCGGGGU-CGGCGCGGCaGCCg-- -3' miRNA: 3'- -UCGGGUCCCGuGCCGCGUCG-CGGagu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 5468 | 0.7 | 0.095396 |
Target: 5'- uGCCUuGcGaGCGCGGCGCucuuGUGCCUCGu -3' miRNA: 3'- uCGGGuC-C-CGUGCCGCGu---CGCGGAGU- -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 33361 | 0.7 | 0.103619 |
Target: 5'- uGGCCCAGcccGGagAgGGCGCacGGCGCCUCc -3' miRNA: 3'- -UCGGGUC---CCg-UgCCGCG--UCGCGGAGu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 30295 | 0.7 | 0.106505 |
Target: 5'- cGGCCCAGGcccuGCGCGaGUuCAGCGCCa-- -3' miRNA: 3'- -UCGGGUCC----CGUGC-CGcGUCGCGGagu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 41215 | 0.69 | 0.12177 |
Target: 5'- uGGUCCAGGGCACGGUcCaccuccuGGCGCUg-- -3' miRNA: 3'- -UCGGGUCCCGUGCCGcG-------UCGCGGagu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 18896 | 0.69 | 0.122102 |
Target: 5'- uGGCCCAGGugGCGGaGCuGCGCCUg- -3' miRNA: 3'- -UCGGGUCCcgUGCCgCGuCGCGGAgu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 41518 | 0.69 | 0.128916 |
Target: 5'- uGCCCuGGGCgGCGaGgGCGGCGCUa-- -3' miRNA: 3'- uCGGGuCCCG-UGC-CgCGUCGCGGagu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 13629 | 0.68 | 0.132453 |
Target: 5'- uAGCCCAGGcGCucgcucauguaGCGG-GCAGCGUCg-- -3' miRNA: 3'- -UCGGGUCC-CG-----------UGCCgCGUCGCGGagu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 4744 | 0.68 | 0.143608 |
Target: 5'- cGCCCGGGGUagcaGCGGUGguG-GUUUCGg -3' miRNA: 3'- uCGGGUCCCG----UGCCGCguCgCGGAGU- -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 8547 | 0.67 | 0.159816 |
Target: 5'- -cCCCu---CACGGCGCAGgGCCUCGu -3' miRNA: 3'- ucGGGucccGUGCCGCGUCgCGGAGU- -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 10575 | 0.67 | 0.170317 |
Target: 5'- aAGCCCAuGGCGCGGUgguagccguaccagcGUAGUaccGCCUCc -3' miRNA: 3'- -UCGGGUcCCGUGCCG---------------CGUCG---CGGAGu -5' |
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22285 | 3' | -64.8 | NC_005045.1 | + | 33442 | 0.67 | 0.177657 |
Target: 5'- cGGCCCAGGa---GGCGCcguGCGcCCUCu -3' miRNA: 3'- -UCGGGUCCcgugCCGCGu--CGC-GGAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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