miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22285 3' -64.8 NC_005045.1 + 31599 0.66 0.218691
Target:  5'- aGGCCCaaguacAGGGCcaacuCGaCGCGGUGCCUa- -3'
miRNA:   3'- -UCGGG------UCCCGu----GCcGCGUCGCGGAgu -5'
22285 3' -64.8 NC_005045.1 + 32160 0.73 0.06278
Target:  5'- gAGCCgCAGaGCACGGC-CAGCGCCg-- -3'
miRNA:   3'- -UCGG-GUCcCGUGCCGcGUCGCGGagu -5'
22285 3' -64.8 NC_005045.1 + 33361 0.7 0.103619
Target:  5'- uGGCCCAGcccGGagAgGGCGCacGGCGCCUCc -3'
miRNA:   3'- -UCGGGUC---CCg-UgCCGCG--UCGCGGAGu -5'
22285 3' -64.8 NC_005045.1 + 33442 0.67 0.177657
Target:  5'- cGGCCCAGGa---GGCGCcguGCGcCCUCu -3'
miRNA:   3'- -UCGGGUCCcgugCCGCGu--CGC-GGAGu -5'
22285 3' -64.8 NC_005045.1 + 34649 0.67 0.182385
Target:  5'- aGGUCCGGGuuGCGGCGCAugGCCcCAa -3'
miRNA:   3'- -UCGGGUCCcgUGCCGCGUcgCGGaGU- -5'
22285 3' -64.8 NC_005045.1 + 36023 1.07 0.000099
Target:  5'- aAGCCCAGGGCACGGCGCAGCGCCUCAu -3'
miRNA:   3'- -UCGGGUCCCGUGCCGCGUCGCGGAGU- -5'
22285 3' -64.8 NC_005045.1 + 36961 0.66 0.202428
Target:  5'- gGGaCCGGGGUACGGuUGCcGGUGCCg-- -3'
miRNA:   3'- -UCgGGUCCCGUGCC-GCG-UCGCGGagu -5'
22285 3' -64.8 NC_005045.1 + 40175 0.66 0.202428
Target:  5'- aGGCCCucaAGGGCAucgaucCGGUcguccuucgGCAGUgaGCCUCGg -3'
miRNA:   3'- -UCGGG---UCCCGU------GCCG---------CGUCG--CGGAGU- -5'
22285 3' -64.8 NC_005045.1 + 40511 0.71 0.090261
Target:  5'- aAGCCCcu-GCGCGGCGCAGC-CCUg- -3'
miRNA:   3'- -UCGGGuccCGUGCCGCGUCGcGGAgu -5'
22285 3' -64.8 NC_005045.1 + 41215 0.69 0.12177
Target:  5'- uGGUCCAGGGCACGGUcCaccuccuGGCGCUg-- -3'
miRNA:   3'- -UCGGGUCCCGUGCCGcG-------UCGCGGagu -5'
22285 3' -64.8 NC_005045.1 + 41518 0.69 0.128916
Target:  5'- uGCCCuGGGCgGCGaGgGCGGCGCUa-- -3'
miRNA:   3'- uCGGGuCCCG-UGC-CgCGUCGCGGagu -5'
22285 3' -64.8 NC_005045.1 + 41569 0.71 0.085152
Target:  5'- cGCCCAGGGCAgUGGCugcugcgaucacaGCGGUgGCCUUg -3'
miRNA:   3'- uCGGGUCCCGU-GCCG-------------CGUCG-CGGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.