miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22285 3' -64.8 NC_005045.1 + 8547 0.67 0.159816
Target:  5'- -cCCCu---CACGGCGCAGgGCCUCGu -3'
miRNA:   3'- ucGGGucccGUGCCGCGUCgCGGAGU- -5'
22285 3' -64.8 NC_005045.1 + 7371 0.73 0.057694
Target:  5'- uAG-CCAGGaGuCACGGCGCAGUGCCa-- -3'
miRNA:   3'- -UCgGGUCC-C-GUGCCGCGUCGCGGagu -5'
22285 3' -64.8 NC_005045.1 + 32160 0.73 0.06278
Target:  5'- gAGCCgCAGaGCACGGC-CAGCGCCg-- -3'
miRNA:   3'- -UCGG-GUCcCGUGCCGcGUCGCGGagu -5'
22285 3' -64.8 NC_005045.1 + 41569 0.71 0.085152
Target:  5'- cGCCCAGGGCAgUGGCugcugcgaucacaGCGGUgGCCUUg -3'
miRNA:   3'- uCGGGUCCCGU-GCCG-------------CGUCG-CGGAGu -5'
22285 3' -64.8 NC_005045.1 + 23266 0.71 0.090261
Target:  5'- uGGUUCGGGGU-CGGCGCGGCaGCCg-- -3'
miRNA:   3'- -UCGGGUCCCGuGCCGCGUCG-CGGagu -5'
22285 3' -64.8 NC_005045.1 + 5468 0.7 0.095396
Target:  5'- uGCCUuGcGaGCGCGGCGCucuuGUGCCUCGu -3'
miRNA:   3'- uCGGGuC-C-CGUGCCGCGu---CGCGGAGU- -5'
22285 3' -64.8 NC_005045.1 + 41215 0.69 0.12177
Target:  5'- uGGUCCAGGGCACGGUcCaccuccuGGCGCUg-- -3'
miRNA:   3'- -UCGGGUCCCGUGCCGcG-------UCGCGGagu -5'
22285 3' -64.8 NC_005045.1 + 18896 0.69 0.122102
Target:  5'- uGGCCCAGGugGCGGaGCuGCGCCUg- -3'
miRNA:   3'- -UCGGGUCCcgUGCCgCGuCGCGGAgu -5'
22285 3' -64.8 NC_005045.1 + 13629 0.68 0.132453
Target:  5'- uAGCCCAGGcGCucgcucauguaGCGG-GCAGCGUCg-- -3'
miRNA:   3'- -UCGGGUCC-CG-----------UGCCgCGUCGCGGagu -5'
22285 3' -64.8 NC_005045.1 + 30308 0.74 0.048692
Target:  5'- cGCCCAGGcCACGGCGCccuGCucgGCCUCc -3'
miRNA:   3'- uCGGGUCCcGUGCCGCGu--CG---CGGAGu -5'
22285 3' -64.8 NC_005045.1 + 10205 0.74 0.046007
Target:  5'- cGUCCAGGGCAgGGaaGCGGCGCC-CGc -3'
miRNA:   3'- uCGGGUCCCGUgCCg-CGUCGCGGaGU- -5'
22285 3' -64.8 NC_005045.1 + 36023 1.07 0.000099
Target:  5'- aAGCCCAGGGCACGGCGCAGCGCCUCAu -3'
miRNA:   3'- -UCGGGUCCCGUGCCGCGUCGCGGAGU- -5'
22285 3' -64.8 NC_005045.1 + 10575 0.67 0.170317
Target:  5'- aAGCCCAuGGCGCGGUgguagccguaccagcGUAGUaccGCCUCc -3'
miRNA:   3'- -UCGGGUcCCGUGCCG---------------CGUCG---CGGAGu -5'
22285 3' -64.8 NC_005045.1 + 27382 0.66 0.197245
Target:  5'- -aCCCAGGGCACGcucCGCAGCGa---- -3'
miRNA:   3'- ucGGGUCCCGUGCc--GCGUCGCggagu -5'
22285 3' -64.8 NC_005045.1 + 33442 0.67 0.177657
Target:  5'- cGGCCCAGGa---GGCGCcguGCGcCCUCu -3'
miRNA:   3'- -UCGGGUCCcgugCCGCGu--CGC-GGAGu -5'
22285 3' -64.8 NC_005045.1 + 24007 0.67 0.182385
Target:  5'- -aCCCAGGGguUGGC-CGGCuGCCUg- -3'
miRNA:   3'- ucGGGUCCCguGCCGcGUCG-CGGAgu -5'
22285 3' -64.8 NC_005045.1 + 40175 0.66 0.202428
Target:  5'- aGGCCCucaAGGGCAucgaucCGGUcguccuucgGCAGUgaGCCUCGg -3'
miRNA:   3'- -UCGGG---UCCCGU------GCCG---------CGUCG--CGGAGU- -5'
22285 3' -64.8 NC_005045.1 + 17896 0.66 0.218131
Target:  5'- cAGCCuccucgguCAGGGCcaccuCGGCgGCGGCcauugcauugaacGCCUCAu -3'
miRNA:   3'- -UCGG--------GUCCCGu----GCCG-CGUCG-------------CGGAGU- -5'
22285 3' -64.8 NC_005045.1 + 17981 0.67 0.182385
Target:  5'- -uUCCAGGGUgGCGGCGCGguauucGCGCCa-- -3'
miRNA:   3'- ucGGGUCCCG-UGCCGCGU------CGCGGagu -5'
22285 3' -64.8 NC_005045.1 + 34649 0.67 0.182385
Target:  5'- aGGUCCGGGuuGCGGCGCAugGCCcCAa -3'
miRNA:   3'- -UCGGGUCCcgUGCCGCGUcgCGGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.