Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 22286 | 3' | -56.8 | NC_005045.1 | + | 36316 | 0.67 | 0.466816 |
|
Target: 5'- -cAGGUG-UGGUGGcgucgCAGauuCGCCGGCc -3' miRNA: 3'- caUCCACuACCACCa----GUC---GUGGCCGa -5' |
|||||||
| 22286 | 3' | -56.8 | NC_005045.1 | + | 38751 | 0.67 | 0.477102 |
|
Target: 5'- -cAGGcGAUGGUGGacUUAGCuucGCCGcGCUg -3' miRNA: 3'- caUCCaCUACCACC--AGUCG---UGGC-CGA- -5' |
|||||||
| 22286 | 3' | -56.8 | NC_005045.1 | + | 12238 | 0.67 | 0.477102 |
|
Target: 5'- --cGGUGAUGGUGGgcCAGUGCCa--- -3' miRNA: 3'- cauCCACUACCACCa-GUCGUGGccga -5' |
|||||||
| 22286 | 3' | -56.8 | NC_005045.1 | + | 8636 | 0.68 | 0.389027 |
|
Target: 5'- --cGGUGcUGGUGG-CAGCGCCuccugaugcgGGCa -3' miRNA: 3'- cauCCACuACCACCaGUCGUGG----------CCGa -5' |
|||||||
| 22286 | 3' | -56.8 | NC_005045.1 | + | 2937 | 0.68 | 0.389027 |
|
Target: 5'- -cGGGUucGUGGUaGUgGGCGCCGGCg -3' miRNA: 3'- caUCCAc-UACCAcCAgUCGUGGCCGa -5' |
|||||||
| 22286 | 3' | -56.8 | NC_005045.1 | + | 36417 | 1.07 | 0.000657 |
|
Target: 5'- gGUAGGUGAUGGUGGUCAGCACCGGCUu -3' miRNA: 3'- -CAUCCACUACCACCAGUCGUGGCCGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home