miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22286 3' -56.8 NC_005045.1 + 36417 1.07 0.000657
Target:  5'- gGUAGGUGAUGGUGGUCAGCACCGGCUu -3'
miRNA:   3'- -CAUCCACUACCACCAGUCGUGGCCGA- -5'
22286 3' -56.8 NC_005045.1 + 8636 0.68 0.389027
Target:  5'- --cGGUGcUGGUGG-CAGCGCCuccugaugcgGGCa -3'
miRNA:   3'- cauCCACuACCACCaGUCGUGG----------CCGa -5'
22286 3' -56.8 NC_005045.1 + 2937 0.68 0.389027
Target:  5'- -cGGGUucGUGGUaGUgGGCGCCGGCg -3'
miRNA:   3'- caUCCAc-UACCAcCAgUCGUGGCCGa -5'
22286 3' -56.8 NC_005045.1 + 36316 0.67 0.466816
Target:  5'- -cAGGUG-UGGUGGcgucgCAGauuCGCCGGCc -3'
miRNA:   3'- caUCCACuACCACCa----GUC---GUGGCCGa -5'
22286 3' -56.8 NC_005045.1 + 38751 0.67 0.477102
Target:  5'- -cAGGcGAUGGUGGacUUAGCuucGCCGcGCUg -3'
miRNA:   3'- caUCCaCUACCACC--AGUCG---UGGC-CGA- -5'
22286 3' -56.8 NC_005045.1 + 12238 0.67 0.477102
Target:  5'- --cGGUGAUGGUGGgcCAGUGCCa--- -3'
miRNA:   3'- cauCCACUACCACCa-GUCGUGGccga -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.