miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22286 5' -54.7 NC_005045.1 + 21615 0.7 0.426872
Target:  5'- aGggUUUGCGAuaCGCCuguGCC-CGCCUGa -3'
miRNA:   3'- gCuuAGACGCU--GCGG---UGGuGUGGACg -5'
22286 5' -54.7 NC_005045.1 + 8699 0.66 0.663464
Target:  5'- aGGAg--GCGcUGCCACCAgCACCgagGCc -3'
miRNA:   3'- gCUUagaCGCuGCGGUGGU-GUGGa--CG- -5'
22286 5' -54.7 NC_005045.1 + 36383 1.13 0.00047
Target:  5'- gCGAAUCUGCGACGCCACCACACCUGCg -3'
miRNA:   3'- -GCUUAGACGCUGCGGUGGUGUGGACG- -5'
22286 5' -54.7 NC_005045.1 + 4158 0.77 0.166612
Target:  5'- uCGAA-CgGCGGCGCCACUgcgaugcaguagcagGCGCCUGCc -3'
miRNA:   3'- -GCUUaGaCGCUGCGGUGG---------------UGUGGACG- -5'
22286 5' -54.7 NC_005045.1 + 37764 0.73 0.296141
Target:  5'- aGggUCUuggaugGCGACGCCACCGucCACguagucgCUGCg -3'
miRNA:   3'- gCuuAGA------CGCUGCGGUGGU--GUG-------GACG- -5'
22286 5' -54.7 NC_005045.1 + 18775 0.72 0.344923
Target:  5'- aGggUCgcgGCGGCGCCAgcaUCACGCUccgGCc -3'
miRNA:   3'- gCuuAGa--CGCUGCGGU---GGUGUGGa--CG- -5'
22286 5' -54.7 NC_005045.1 + 39274 0.72 0.35345
Target:  5'- aGAGggUGCGAgccaguCGCCAUaaCGCGCCUGCu -3'
miRNA:   3'- gCUUagACGCU------GCGGUG--GUGUGGACG- -5'
22286 5' -54.7 NC_005045.1 + 28542 0.71 0.407675
Target:  5'- ----cCUGCGAgGCCACgGCuuGCUUGCg -3'
miRNA:   3'- gcuuaGACGCUgCGGUGgUG--UGGACG- -5'
22286 5' -54.7 NC_005045.1 + 14187 0.71 0.407675
Target:  5'- gGAAgaUGCGAcCGCCGCCACcGCCgGUg -3'
miRNA:   3'- gCUUagACGCU-GCGGUGGUG-UGGaCG- -5'
22286 5' -54.7 NC_005045.1 + 38479 0.66 0.65227
Target:  5'- gCGAuacgGCGAUucuCCGCCuGCGCCUGCc -3'
miRNA:   3'- -GCUuagaCGCUGc--GGUGG-UGUGGACG- -5'
22286 5' -54.7 NC_005045.1 + 23437 0.67 0.596224
Target:  5'- aCGggUugacCUGCGGCaGgCACCGcCACCgGCu -3'
miRNA:   3'- -GCuuA----GACGCUG-CgGUGGU-GUGGaCG- -5'
22286 5' -54.7 NC_005045.1 + 5719 0.68 0.573958
Target:  5'- --cGUCacagGUGACGCCGCuCACACggGCg -3'
miRNA:   3'- gcuUAGa---CGCUGCGGUG-GUGUGgaCG- -5'
22286 5' -54.7 NC_005045.1 + 10190 0.7 0.466816
Target:  5'- ------aGCGGCGCCcgcugcgggacACCACGCCaUGCg -3'
miRNA:   3'- gcuuagaCGCUGCGG-----------UGGUGUGG-ACG- -5'
22286 5' -54.7 NC_005045.1 + 15364 0.67 0.596224
Target:  5'- aCGuGUC-GCGguACGCCuugGCCcCACCUGCu -3'
miRNA:   3'- -GCuUAGaCGC--UGCGG---UGGuGUGGACG- -5'
22286 5' -54.7 NC_005045.1 + 15075 0.69 0.508605
Target:  5'- uCGAcggCaGCGGgagcCGCCACCGgggcCACCUGCg -3'
miRNA:   3'- -GCUua-GaCGCU----GCGGUGGU----GUGGACG- -5'
22286 5' -54.7 NC_005045.1 + 8048 0.68 0.55189
Target:  5'- cCGGAgc--CGGCG-CAUCACGCCUGCa -3'
miRNA:   3'- -GCUUagacGCUGCgGUGGUGUGGACG- -5'
22286 5' -54.7 NC_005045.1 + 19386 0.67 0.628713
Target:  5'- gGAGUUgGCGACguguaccuugaGCCaguauagGCCACGCUUGCc -3'
miRNA:   3'- gCUUAGaCGCUG-----------CGG-------UGGUGUGGACG- -5'
22286 5' -54.7 NC_005045.1 + 7971 0.66 0.696817
Target:  5'- -aGGUCUGCugcaacauGAuCGCCGCCA-GCCUGUc -3'
miRNA:   3'- gcUUAGACG--------CU-GCGGUGGUgUGGACG- -5'
22286 5' -54.7 NC_005045.1 + 35519 0.69 0.519302
Target:  5'- ----cCUGCGGCGCCGCUgacgauauCGCCggugGCg -3'
miRNA:   3'- gcuuaGACGCUGCGGUGGu-------GUGGa---CG- -5'
22286 5' -54.7 NC_005045.1 + 29824 0.68 0.55189
Target:  5'- gCGAgGUCUGUGAUGgCACCGuuggcCACCcGCu -3'
miRNA:   3'- -GCU-UAGACGCUGCgGUGGU-----GUGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.