miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22286 5' -54.7 NC_005045.1 + 18703 0.7 0.426873
Target:  5'- cCGGAgcgugaUGCuGGCGCCGCCGCGacCCUGg -3'
miRNA:   3'- -GCUUag----ACG-CUGCGGUGGUGU--GGACg -5'
22286 5' -54.7 NC_005045.1 + 30583 0.66 0.68575
Target:  5'- gCGAAgcccuUCUGgaGAuCGCCGCCGCcaACgUGCg -3'
miRNA:   3'- -GCUU-----AGACg-CU-GCGGUGGUG--UGgACG- -5'
22286 5' -54.7 NC_005045.1 + 18045 0.66 0.68575
Target:  5'- aCGAagaggcccuuGUCgggGCGGCGCagaACgACGCCcGCa -3'
miRNA:   3'- -GCU----------UAGa--CGCUGCGg--UGgUGUGGaCG- -5'
22286 5' -54.7 NC_005045.1 + 3648 0.66 0.673513
Target:  5'- uCGAAcuaugguuccUCggcgGCGugGUCGCUAUcugcccgGCCUGCg -3'
miRNA:   3'- -GCUU----------AGa---CGCugCGGUGGUG-------UGGACG- -5'
22286 5' -54.7 NC_005045.1 + 35453 0.67 0.629836
Target:  5'- gCGAuaucGUCaGCGGCGCCGCagGgGCaCUGCc -3'
miRNA:   3'- -GCU----UAGaCGCUGCGGUGg-UgUG-GACG- -5'
22286 5' -54.7 NC_005045.1 + 35934 0.67 0.607409
Target:  5'- gGAAgcaCU-CGACGCCGCCAaugagGCgCUGCg -3'
miRNA:   3'- gCUUa--GAcGCUGCGGUGGUg----UG-GACG- -5'
22286 5' -54.7 NC_005045.1 + 29609 0.68 0.573958
Target:  5'- aGggUCUgcGCGACGCCGgCuu-CCUGg -3'
miRNA:   3'- gCuuAGA--CGCUGCGGUgGuguGGACg -5'
22286 5' -54.7 NC_005045.1 + 17907 0.68 0.562895
Target:  5'- aGAGUg-GCGcgaauaccGCGCCGCCAC-CCUGg -3'
miRNA:   3'- gCUUAgaCGC--------UGCGGUGGUGuGGACg -5'
22286 5' -54.7 NC_005045.1 + 16873 0.68 0.55189
Target:  5'- uGGA-CUGCcagGGCGCC-CCGCuggacgACCUGCa -3'
miRNA:   3'- gCUUaGACG---CUGCGGuGGUG------UGGACG- -5'
22286 5' -54.7 NC_005045.1 + 2577 0.68 0.540952
Target:  5'- -cGAUCUcGuCGGCGCCACCAacaGCCcGUg -3'
miRNA:   3'- gcUUAGA-C-GCUGCGGUGGUg--UGGaCG- -5'
22286 5' -54.7 NC_005045.1 + 19463 0.68 0.530086
Target:  5'- cCGAGUCcccGCucuGCGCCAUCGCAggUCUGCu -3'
miRNA:   3'- -GCUUAGa--CGc--UGCGGUGGUGU--GGACG- -5'
22286 5' -54.7 NC_005045.1 + 14853 0.69 0.4875
Target:  5'- gCGGAUgCUggcGCGACuGCCGCCcCugCUGUa -3'
miRNA:   3'- -GCUUA-GA---CGCUG-CGGUGGuGugGACG- -5'
22286 5' -54.7 NC_005045.1 + 41529 0.69 0.477103
Target:  5'- gCGAGg--GCGGCGCUACCcCACCggacccGCu -3'
miRNA:   3'- -GCUUagaCGCUGCGGUGGuGUGGa-----CG- -5'
22286 5' -54.7 NC_005045.1 + 14187 0.71 0.407675
Target:  5'- gGAAgaUGCGAcCGCCGCCACcGCCgGUg -3'
miRNA:   3'- gCUUagACGCU-GCGGUGGUG-UGGaCG- -5'
22286 5' -54.7 NC_005045.1 + 28542 0.71 0.407675
Target:  5'- ----cCUGCGAgGCCACgGCuuGCUUGCg -3'
miRNA:   3'- gcuuaGACGCUgCGGUGgUG--UGGACG- -5'
22286 5' -54.7 NC_005045.1 + 39274 0.72 0.35345
Target:  5'- aGAGggUGCGAgccaguCGCCAUaaCGCGCCUGCu -3'
miRNA:   3'- gCUUagACGCU------GCGGUG--GUGUGGACG- -5'
22286 5' -54.7 NC_005045.1 + 18775 0.72 0.344923
Target:  5'- aGggUCgcgGCGGCGCCAgcaUCACGCUccgGCc -3'
miRNA:   3'- gCuuAGa--CGCUGCGGU---GGUGUGGa--CG- -5'
22286 5' -54.7 NC_005045.1 + 37764 0.73 0.296141
Target:  5'- aGggUCUuggaugGCGACGCCACCGucCACguagucgCUGCg -3'
miRNA:   3'- gCuuAGA------CGCUGCGGUGGU--GUG-------GACG- -5'
22286 5' -54.7 NC_005045.1 + 4158 0.77 0.166612
Target:  5'- uCGAA-CgGCGGCGCCACUgcgaugcaguagcagGCGCCUGCc -3'
miRNA:   3'- -GCUUaGaCGCUGCGGUGG---------------UGUGGACG- -5'
22286 5' -54.7 NC_005045.1 + 7971 0.66 0.696817
Target:  5'- -aGGUCUGCugcaacauGAuCGCCGCCA-GCCUGUc -3'
miRNA:   3'- gcUUAGACG--------CU-GCGGUGGUgUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.