Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22286 | 5' | -54.7 | NC_005045.1 | + | 30320 | 0.66 | 0.663464 |
Target: 5'- --cAUCUGCuugaGCGCCcagGCCACGgcgcCCUGCu -3' miRNA: 3'- gcuUAGACGc---UGCGG---UGGUGU----GGACG- -5' |
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22286 | 5' | -54.7 | NC_005045.1 | + | 11798 | 0.66 | 0.663464 |
Target: 5'- gCGGuauUCU-CGAUGUCACCGCACggGCc -3' miRNA: 3'- -GCUu--AGAcGCUGCGGUGGUGUGgaCG- -5' |
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22286 | 5' | -54.7 | NC_005045.1 | + | 33825 | 0.66 | 0.674627 |
Target: 5'- gCGAAgucCU-CGAaaCCACgCACACCUGCu -3' miRNA: 3'- -GCUUa--GAcGCUgcGGUG-GUGUGGACG- -5' |
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22286 | 5' | -54.7 | NC_005045.1 | + | 29018 | 0.66 | 0.696817 |
Target: 5'- aGAAUCUGCGAgccuaCGCUcggACCGCugUaGUu -3' miRNA: 3'- gCUUAGACGCU-----GCGG---UGGUGugGaCG- -5' |
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22286 | 5' | -54.7 | NC_005045.1 | + | 29824 | 0.68 | 0.55189 |
Target: 5'- gCGAgGUCUGUGAUGgCACCGuuggcCACCcGCu -3' miRNA: 3'- -GCU-UAGACGCUGCgGUGGU-----GUGGaCG- -5' |
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22286 | 5' | -54.7 | NC_005045.1 | + | 35519 | 0.69 | 0.519302 |
Target: 5'- ----cCUGCGGCGCCGCUgacgauauCGCCggugGCg -3' miRNA: 3'- gcuuaGACGCUGCGGUGGu-------GUGGa---CG- -5' |
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22286 | 5' | -54.7 | NC_005045.1 | + | 36383 | 1.13 | 0.00047 |
Target: 5'- gCGAAUCUGCGACGCCACCACACCUGCg -3' miRNA: 3'- -GCUUAGACGCUGCGGUGGUGUGGACG- -5' |
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22286 | 5' | -54.7 | NC_005045.1 | + | 4158 | 0.77 | 0.166612 |
Target: 5'- uCGAA-CgGCGGCGCCACUgcgaugcaguagcagGCGCCUGCc -3' miRNA: 3'- -GCUUaGaCGCUGCGGUGG---------------UGUGGACG- -5' |
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22286 | 5' | -54.7 | NC_005045.1 | + | 37764 | 0.73 | 0.296141 |
Target: 5'- aGggUCUuggaugGCGACGCCACCGucCACguagucgCUGCg -3' miRNA: 3'- gCuuAGA------CGCUGCGGUGGU--GUG-------GACG- -5' |
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22286 | 5' | -54.7 | NC_005045.1 | + | 18775 | 0.72 | 0.344923 |
Target: 5'- aGggUCgcgGCGGCGCCAgcaUCACGCUccgGCc -3' miRNA: 3'- gCuuAGa--CGCUGCGGU---GGUGUGGa--CG- -5' |
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22286 | 5' | -54.7 | NC_005045.1 | + | 39274 | 0.72 | 0.35345 |
Target: 5'- aGAGggUGCGAgccaguCGCCAUaaCGCGCCUGCu -3' miRNA: 3'- gCUUagACGCU------GCGGUG--GUGUGGACG- -5' |
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22286 | 5' | -54.7 | NC_005045.1 | + | 28542 | 0.71 | 0.407675 |
Target: 5'- ----cCUGCGAgGCCACgGCuuGCUUGCg -3' miRNA: 3'- gcuuaGACGCUgCGGUGgUG--UGGACG- -5' |
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22286 | 5' | -54.7 | NC_005045.1 | + | 14187 | 0.71 | 0.407675 |
Target: 5'- gGAAgaUGCGAcCGCCGCCACcGCCgGUg -3' miRNA: 3'- gCUUagACGCU-GCGGUGGUG-UGGaCG- -5' |
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22286 | 5' | -54.7 | NC_005045.1 | + | 23344 | 0.7 | 0.426872 |
Target: 5'- aGuugCUGCGGCGCaccCACCugACCggGCu -3' miRNA: 3'- gCuuaGACGCUGCG---GUGGugUGGa-CG- -5' |
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22286 | 5' | -54.7 | NC_005045.1 | + | 21615 | 0.7 | 0.426872 |
Target: 5'- aGggUUUGCGAuaCGCCuguGCC-CGCCUGa -3' miRNA: 3'- gCuuAGACGCU--GCGG---UGGuGUGGACg -5' |
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22286 | 5' | -54.7 | NC_005045.1 | + | 10190 | 0.7 | 0.466816 |
Target: 5'- ------aGCGGCGCCcgcugcgggacACCACGCCaUGCg -3' miRNA: 3'- gcuuagaCGCUGCGG-----------UGGUGUGG-ACG- -5' |
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22286 | 5' | -54.7 | NC_005045.1 | + | 15075 | 0.69 | 0.508605 |
Target: 5'- uCGAcggCaGCGGgagcCGCCACCGgggcCACCUGCg -3' miRNA: 3'- -GCUua-GaCGCU----GCGGUGGU----GUGGACG- -5' |
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22286 | 5' | -54.7 | NC_005045.1 | + | 7971 | 0.66 | 0.696817 |
Target: 5'- -aGGUCUGCugcaacauGAuCGCCGCCA-GCCUGUc -3' miRNA: 3'- gcUUAGACG--------CU-GCGGUGGUgUGGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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