miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22292 3' -55 NC_005045.1 + 17650 0.69 0.432637
Target:  5'- gAUGCAGUggGCCGCCgaggUCAaGGGCuaccuGCCu -3'
miRNA:   3'- -UGCGUUA--UGGCGGa---GGUaUCCGu----CGG- -5'
22292 3' -55 NC_005045.1 + 17813 0.75 0.185489
Target:  5'- aAUGCAAUgGCCGCCgCCG-AGGUGGCCc -3'
miRNA:   3'- -UGCGUUA-UGGCGGaGGUaUCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 17912 0.68 0.515706
Target:  5'- gGCGCgAAUACCGCgCcgCCAcccuggaacAGGCGGUCa -3'
miRNA:   3'- -UGCG-UUAUGGCG-Ga-GGUa--------UCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 18488 0.66 0.604493
Target:  5'- gACGCGGUGCUGCC-CgAagAGGCAcgaaucgaccuGCCc -3'
miRNA:   3'- -UGCGUUAUGGCGGaGgUa-UCCGU-----------CGG- -5'
22292 3' -55 NC_005045.1 + 18669 0.67 0.544106
Target:  5'- gACGCucGUGCCGCC-CCGcccugugaagcgguUGGGUucgaacaAGCCg -3'
miRNA:   3'- -UGCGu-UAUGGCGGaGGU--------------AUCCG-------UCGG- -5'
22292 3' -55 NC_005045.1 + 22159 0.7 0.422803
Target:  5'- cGCGCAG-GCCGCaaccugUCCGguucGGGCAGCg -3'
miRNA:   3'- -UGCGUUaUGGCGg-----AGGUa---UCCGUCGg -5'
22292 3' -55 NC_005045.1 + 22413 0.66 0.638449
Target:  5'- gACGUg--GCCGCgaCCGUAGuGCucGCCa -3'
miRNA:   3'- -UGCGuuaUGGCGgaGGUAUC-CGu-CGG- -5'
22292 3' -55 NC_005045.1 + 24135 0.66 0.64977
Target:  5'- uGCGCcAUACCuGCCUUacgacgcucgCGcAGcGCAGCCa -3'
miRNA:   3'- -UGCGuUAUGG-CGGAG----------GUaUC-CGUCGG- -5'
22292 3' -55 NC_005045.1 + 26631 0.67 0.581964
Target:  5'- aAUGCGAUguacccguccuGCaCGCC-CCGUugguugAGGUAGCCg -3'
miRNA:   3'- -UGCGUUA-----------UG-GCGGaGGUA------UCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 27259 0.68 0.494273
Target:  5'- cACGCAGUA-CGaCCUCgAUaccaGGGCGGCa -3'
miRNA:   3'- -UGCGUUAUgGC-GGAGgUA----UCCGUCGg -5'
22292 3' -55 NC_005045.1 + 28156 0.66 0.627122
Target:  5'- aGCGCugugGUGCCGCUgCCGgcacGGGUcgauauGGCCa -3'
miRNA:   3'- -UGCGu---UAUGGCGGaGGUa---UCCG------UCGG- -5'
22292 3' -55 NC_005045.1 + 28379 0.68 0.48371
Target:  5'- gGCGgAcAUGCCGCCagcggCCAauaguGGUAGCCa -3'
miRNA:   3'- -UGCgU-UAUGGCGGa----GGUau---CCGUCGG- -5'
22292 3' -55 NC_005045.1 + 28893 0.66 0.64977
Target:  5'- uUGCGAUuccgccaucaGuuGCCUCCuuUAGGCGuggcGCCg -3'
miRNA:   3'- uGCGUUA----------UggCGGAGGu-AUCCGU----CGG- -5'
22292 3' -55 NC_005045.1 + 29615 0.67 0.581964
Target:  5'- uGCGCGAcGCCgGCUUCCu--GGaCAGCa -3'
miRNA:   3'- -UGCGUUaUGG-CGGAGGuauCC-GUCGg -5'
22292 3' -55 NC_005045.1 + 29978 0.66 0.624857
Target:  5'- gGCGUugaugucccCCGCUUCCA-GGGCcGCCa -3'
miRNA:   3'- -UGCGuuau-----GGCGGAGGUaUCCGuCGG- -5'
22292 3' -55 NC_005045.1 + 30093 0.71 0.366735
Target:  5'- aGCGCGGU-UCGCaugaUCC--AGGCGGCCa -3'
miRNA:   3'- -UGCGUUAuGGCGg---AGGuaUCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 30616 0.72 0.292692
Target:  5'- uGCGCA--ACCGCaccaUCCAggUGGGCgagGGCCg -3'
miRNA:   3'- -UGCGUuaUGGCGg---AGGU--AUCCG---UCGG- -5'
22292 3' -55 NC_005045.1 + 30832 0.71 0.340686
Target:  5'- -aGUAcgACCGCa-CCAgcGGCAGCCu -3'
miRNA:   3'- ugCGUuaUGGCGgaGGUauCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 32419 0.73 0.256865
Target:  5'- cGCGUGcgGCgGCCUCCuc-GGCGGUCa -3'
miRNA:   3'- -UGCGUuaUGgCGGAGGuauCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 32633 0.7 0.422803
Target:  5'- -gGCAgcGUACCGCgUUCCGUguggugcaGGGCGGCg -3'
miRNA:   3'- ugCGU--UAUGGCG-GAGGUA--------UCCGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.