miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22292 3' -55 NC_005045.1 + 236 0.67 0.548522
Target:  5'- cCGCAGgg-CGCUggguaugagCCgAUGGGCAGCCa -3'
miRNA:   3'- uGCGUUaugGCGGa--------GG-UAUCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 944 1.11 0.000462
Target:  5'- cACGCAAUACCGCCUCCAUAGGCAGCCu -3'
miRNA:   3'- -UGCGUUAUGGCGGAGGUAUCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 2059 0.7 0.394124
Target:  5'- aACGCAAaGCCGCCaaggcucgCCGcgacaAGGCAcGCCg -3'
miRNA:   3'- -UGCGUUaUGGCGGa-------GGUa----UCCGU-CGG- -5'
22292 3' -55 NC_005045.1 + 2203 0.74 0.224708
Target:  5'- cACGCAGUGCCGgCUaCCu--GGCcGCCg -3'
miRNA:   3'- -UGCGUUAUGGCgGA-GGuauCCGuCGG- -5'
22292 3' -55 NC_005045.1 + 2436 0.67 0.548522
Target:  5'- gGCGCuguAUGaaGCCaugCCuaauGGCAGCCg -3'
miRNA:   3'- -UGCGu--UAUggCGGa--GGuau-CCGUCGG- -5'
22292 3' -55 NC_005045.1 + 4138 0.68 0.50494
Target:  5'- gAUGCAGUAgcaggCGCCUgCCAgcaggccgAGGCAGCa -3'
miRNA:   3'- -UGCGUUAUg----GCGGA-GGUa-------UCCGUCGg -5'
22292 3' -55 NC_005045.1 + 4434 0.71 0.357902
Target:  5'- cCGCAGUGCUGCCcgugguuaUCCAUGacgacGGCccuGCCa -3'
miRNA:   3'- uGCGUUAUGGCGG--------AGGUAU-----CCGu--CGG- -5'
22292 3' -55 NC_005045.1 + 4993 0.68 0.526563
Target:  5'- aGCGCcAUcCgCGCCgUCCAgucgucGGCAGCCc -3'
miRNA:   3'- -UGCGuUAuG-GCGG-AGGUau----CCGUCGG- -5'
22292 3' -55 NC_005045.1 + 6152 0.68 0.537504
Target:  5'- uGCGguAUACCuuccgcGCUUCCGUggcgaAGGCugaGGCCg -3'
miRNA:   3'- -UGCguUAUGG------CGGAGGUA-----UCCG---UCGG- -5'
22292 3' -55 NC_005045.1 + 7357 0.65 0.658815
Target:  5'- gGCGCAGUGCCauugguaccauuCCUCCcacaaAGGCcgcAGCCc -3'
miRNA:   3'- -UGCGUUAUGGc-----------GGAGGua---UCCG---UCGG- -5'
22292 3' -55 NC_005045.1 + 7717 0.69 0.442604
Target:  5'- aGC-CGAUGCUGCCUUucgcuguacagCAgcGGCAGCCc -3'
miRNA:   3'- -UGcGUUAUGGCGGAG-----------GUauCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 9285 0.67 0.575236
Target:  5'- cACGCAugaccuguugauCCGCa-CCGUugAGGCGGCCu -3'
miRNA:   3'- -UGCGUuau---------GGCGgaGGUA--UCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 9882 0.74 0.237141
Target:  5'- gGCGCGG-GCCGCCUUCG-GGGUcgGGCCa -3'
miRNA:   3'- -UGCGUUaUGGCGGAGGUaUCCG--UCGG- -5'
22292 3' -55 NC_005045.1 + 10368 0.67 0.592085
Target:  5'- cGCGCAagucccaccucguGUACgaugagCGCCgcgCCAUGGuccGCAGCCu -3'
miRNA:   3'- -UGCGU-------------UAUG------GCGGa--GGUAUC---CGUCGG- -5'
22292 3' -55 NC_005045.1 + 10547 0.88 0.022579
Target:  5'- aGCGUAGUACCGCCUCCAUAGaacggcaggauuguGCGGCUa -3'
miRNA:   3'- -UGCGUUAUGGCGGAGGUAUC--------------CGUCGG- -5'
22292 3' -55 NC_005045.1 + 13237 0.67 0.59772
Target:  5'- gGCGcCAGUACCGCCggggauucuGGCAagcGCCg -3'
miRNA:   3'- -UGC-GUUAUGGCGGagguau---CCGU---CGG- -5'
22292 3' -55 NC_005045.1 + 14862 0.68 0.523296
Target:  5'- gGCGCGAcUGCCGCCccugCUGUaccggcugucccgcAGGCAGUg -3'
miRNA:   3'- -UGCGUU-AUGGCGGa---GGUA--------------UCCGUCGg -5'
22292 3' -55 NC_005045.1 + 15157 0.65 0.661074
Target:  5'- gACGCcgacggccCCGCCUaCGUGGcuGCGGCCa -3'
miRNA:   3'- -UGCGuuau----GGCGGAgGUAUC--CGUCGG- -5'
22292 3' -55 NC_005045.1 + 15239 0.71 0.340686
Target:  5'- cGCGUAGUgGCCGCagccaCGUAGGCggGGCCg -3'
miRNA:   3'- -UGCGUUA-UGGCGgag--GUAUCCG--UCGG- -5'
22292 3' -55 NC_005045.1 + 16534 0.69 0.473256
Target:  5'- -aGCAAUcCCGCUUCgGUgAGGUgAGCCg -3'
miRNA:   3'- ugCGUUAuGGCGGAGgUA-UCCG-UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.