miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22292 3' -55 NC_005045.1 + 944 1.11 0.000462
Target:  5'- cACGCAAUACCGCCUCCAUAGGCAGCCu -3'
miRNA:   3'- -UGCGUUAUGGCGGAGGUAUCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 10547 0.88 0.022579
Target:  5'- aGCGUAGUACCGCCUCCAUAGaacggcaggauuguGCGGCUa -3'
miRNA:   3'- -UGCGUUAUGGCGGAGGUAUC--------------CGUCGG- -5'
22292 3' -55 NC_005045.1 + 17813 0.75 0.185489
Target:  5'- aAUGCAAUgGCCGCCgCCG-AGGUGGCCc -3'
miRNA:   3'- -UGCGUUA-UGGCGGaGGUaUCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 2203 0.74 0.224708
Target:  5'- cACGCAGUGCCGgCUaCCu--GGCcGCCg -3'
miRNA:   3'- -UGCGUUAUGGCgGA-GGuauCCGuCGG- -5'
22292 3' -55 NC_005045.1 + 9882 0.74 0.237141
Target:  5'- gGCGCGG-GCCGCCUUCG-GGGUcgGGCCa -3'
miRNA:   3'- -UGCGUUaUGGCGGAGGUaUCCG--UCGG- -5'
22292 3' -55 NC_005045.1 + 32419 0.73 0.256865
Target:  5'- cGCGUGcgGCgGCCUCCuc-GGCGGUCa -3'
miRNA:   3'- -UGCGUuaUGgCGGAGGuauCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 33712 0.73 0.277911
Target:  5'- uACGCGGa--CGCUaCCGUAGGCAGUCc -3'
miRNA:   3'- -UGCGUUaugGCGGaGGUAUCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 30616 0.72 0.292692
Target:  5'- uGCGCA--ACCGCaccaUCCAggUGGGCgagGGCCg -3'
miRNA:   3'- -UGCGUuaUGGCGg---AGGU--AUCCG---UCGG- -5'
22292 3' -55 NC_005045.1 + 15239 0.71 0.340686
Target:  5'- cGCGUAGUgGCCGCagccaCGUAGGCggGGCCg -3'
miRNA:   3'- -UGCGUUA-UGGCGgag--GUAUCCG--UCGG- -5'
22292 3' -55 NC_005045.1 + 38556 0.71 0.340686
Target:  5'- gGCGUcAUGCUGCCUCCuuaGUGGGUguaaGGCg -3'
miRNA:   3'- -UGCGuUAUGGCGGAGG---UAUCCG----UCGg -5'
22292 3' -55 NC_005045.1 + 30832 0.71 0.340686
Target:  5'- -aGUAcgACCGCa-CCAgcGGCAGCCu -3'
miRNA:   3'- ugCGUuaUGGCGgaGGUauCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 4434 0.71 0.357902
Target:  5'- cCGCAGUGCUGCCcgugguuaUCCAUGacgacGGCccuGCCa -3'
miRNA:   3'- uGCGUUAUGGCGG--------AGGUAU-----CCGu--CGG- -5'
22292 3' -55 NC_005045.1 + 33378 0.71 0.366735
Target:  5'- gGCGCAcgG-CGCCUCC-UGGGCcGUCu -3'
miRNA:   3'- -UGCGUuaUgGCGGAGGuAUCCGuCGG- -5'
22292 3' -55 NC_005045.1 + 30093 0.71 0.366735
Target:  5'- aGCGCGGU-UCGCaugaUCC--AGGCGGCCa -3'
miRNA:   3'- -UGCGUUAuGGCGg---AGGuaUCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 40310 0.7 0.384848
Target:  5'- gAUGCucGAUACCGCCaCCG-AGGCGGgCa -3'
miRNA:   3'- -UGCG--UUAUGGCGGaGGUaUCCGUCgG- -5'
22292 3' -55 NC_005045.1 + 2059 0.7 0.394124
Target:  5'- aACGCAAaGCCGCCaaggcucgCCGcgacaAGGCAcGCCg -3'
miRNA:   3'- -UGCGUUaUGGCGGa-------GGUa----UCCGU-CGG- -5'
22292 3' -55 NC_005045.1 + 38458 0.7 0.403543
Target:  5'- uGCGCc-UGCCGCauCUCCucgcggAGGCGGUCg -3'
miRNA:   3'- -UGCGuuAUGGCG--GAGGua----UCCGUCGG- -5'
22292 3' -55 NC_005045.1 + 33666 0.7 0.413104
Target:  5'- cGCGUAGacccgaaccUGCCGCCgaCCAUcaAGGCccuGGCCg -3'
miRNA:   3'- -UGCGUU---------AUGGCGGa-GGUA--UCCG---UCGG- -5'
22292 3' -55 NC_005045.1 + 22159 0.7 0.422803
Target:  5'- cGCGCAG-GCCGCaaccugUCCGguucGGGCAGCg -3'
miRNA:   3'- -UGCGUUaUGGCGg-----AGGUa---UCCGUCGg -5'
22292 3' -55 NC_005045.1 + 32633 0.7 0.422803
Target:  5'- -gGCAgcGUACCGCgUUCCGUguggugcaGGGCGGCg -3'
miRNA:   3'- ugCGU--UAUGGCG-GAGGUA--------UCCGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.