Results 1 - 20 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 30903 | 0.66 | 0.811197 |
Target: 5'- gCGAG-GAGGCugCCGCugGUGc--GGUCg -3' miRNA: 3'- -GCUCaUUCCG--GGCGugCAUuauCCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 34036 | 0.66 | 0.811197 |
Target: 5'- gGAG-GAGGCCa--ACGUGucccAGGCCa -3' miRNA: 3'- gCUCaUUCCGGgcgUGCAUua--UCCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 38603 | 0.66 | 0.801366 |
Target: 5'- gCGGGUAcauGuCCCGCACcucGUGGGCUa -3' miRNA: 3'- -GCUCAUu--CcGGGCGUGcauUAUCCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 41387 | 0.66 | 0.801366 |
Target: 5'- aGGGcguugcauAGGUCCaGgGCGUccuGAUAGGCCg -3' miRNA: 3'- gCUCau------UCCGGG-CgUGCA---UUAUCCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 29052 | 0.66 | 0.801366 |
Target: 5'- -cGGUGAGcguGCCCGUAUGgccgGcgAGGCUg -3' miRNA: 3'- gcUCAUUC---CGGGCGUGCa---UuaUCCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 23674 | 0.66 | 0.757084 |
Target: 5'- uGGGUccGGCCCaggcucaGCACGUcaucaacguGGCCa -3' miRNA: 3'- gCUCAuuCCGGG-------CGUGCAuuau-----CCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 17632 | 0.67 | 0.738826 |
Target: 5'- gCGAGaacucGCUCGCAUGaugcAGUGGGCCg -3' miRNA: 3'- -GCUCauuc-CGGGCGUGCa---UUAUCCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 19004 | 0.67 | 0.716927 |
Target: 5'- cCGAGUu---CCCGCuCGgugacgAGUGGGCCa -3' miRNA: 3'- -GCUCAuuccGGGCGuGCa-----UUAUCCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 38852 | 0.67 | 0.705836 |
Target: 5'- ----cGAGGCCCGCAUG-GGUGaccguaccucGGCCa -3' miRNA: 3'- gcucaUUCCGGGCGUGCaUUAU----------CCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 41062 | 0.68 | 0.683437 |
Target: 5'- ------cGGCCCGUGCGg---AGGCCc -3' miRNA: 3'- gcucauuCCGGGCGUGCauuaUCCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 32939 | 0.68 | 0.683437 |
Target: 5'- ----cAGGGUCUGCAUGgccUGGGCCa -3' miRNA: 3'- gcucaUUCCGGGCGUGCauuAUCCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 39349 | 0.68 | 0.672152 |
Target: 5'- aCGGGUgccgucGAGGCCCuugccgguGCGCGgguuguGGCCu -3' miRNA: 3'- -GCUCA------UUCCGGG--------CGUGCauuau-CCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 22382 | 0.68 | 0.665361 |
Target: 5'- gCGAGguuccAGGUCgGCACGaUguacggacacaggugGAUAGGCCa -3' miRNA: 3'- -GCUCau---UCCGGgCGUGC-A---------------UUAUCCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 29813 | 0.68 | 0.660828 |
Target: 5'- uCGAG-GAGGgCCGCugGagcGAUgcucAGGCCa -3' miRNA: 3'- -GCUCaUUCCgGGCGugCa--UUA----UCCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 15240 | 0.68 | 0.660828 |
Target: 5'- cCGcGUAGuGGCCgcaGcCACGUAGgcgGGGCCg -3' miRNA: 3'- -GCuCAUU-CCGGg--C-GUGCAUUa--UCCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 31664 | 0.69 | 0.638104 |
Target: 5'- uCGAGUu-GGCCCuGUACu---UGGGCCu -3' miRNA: 3'- -GCUCAuuCCGGG-CGUGcauuAUCCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 32357 | 0.7 | 0.547803 |
Target: 5'- cCGAG-GAGGCcgCCGCACGcggcuucaAGGCCg -3' miRNA: 3'- -GCUCaUUCCG--GGCGUGCauua----UCCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 10258 | 0.7 | 0.536741 |
Target: 5'- -cAGUGAGGCgaCCGgGCGUAu--GGCCc -3' miRNA: 3'- gcUCAUUCCG--GGCgUGCAUuauCCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 5749 | 0.7 | 0.525759 |
Target: 5'- gCGGGUAGcGGCCaGCuuGUGccAGGCCg -3' miRNA: 3'- -GCUCAUU-CCGGgCGugCAUuaUCCGG- -5' |
|||||||
22299 | 3' | -52.7 | NC_005045.1 | + | 8477 | 0.71 | 0.493352 |
Target: 5'- uGAGcgacGAGGCCCuGCGcCGUGAggGGGUCa -3' miRNA: 3'- gCUCa---UUCCGGG-CGU-GCAUUa-UCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home