miRNA display CGI


Results 21 - 25 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22299 5' -53.7 NC_005045.1 + 20932 0.73 0.303656
Target:  5'- uGGGCCUG-UGCuGGCUGGCaGUACa -3'
miRNA:   3'- gCCCGGAUaACGcUCGAUCGgUAUGg -5'
22299 5' -53.7 NC_005045.1 + 40127 0.75 0.246097
Target:  5'- aGGGCCUuguccGCGAGCUAGCac--CCa -3'
miRNA:   3'- gCCCGGAuaa--CGCUCGAUCGguauGG- -5'
22299 5' -53.7 NC_005045.1 + 6959 0.76 0.214918
Target:  5'- aCGGGCCgc---CGAGCUGGCUGgUGCCg -3'
miRNA:   3'- -GCCCGGauaacGCUCGAUCGGU-AUGG- -5'
22299 5' -53.7 NC_005045.1 + 20050 0.77 0.187189
Target:  5'- aGGGCCUua-GCGAGCcgcuggAGCCAUuCCa -3'
miRNA:   3'- gCCCGGAuaaCGCUCGa-----UCGGUAuGG- -5'
22299 5' -53.7 NC_005045.1 + 5094 1.13 0.000479
Target:  5'- cCGGGCCUAUUGCGAGCUAGCCAUACCa -3'
miRNA:   3'- -GCCCGGAUAACGCUCGAUCGGUAUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.