miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
223 5' -58.4 AC_000008.1 + 24345 0.66 0.387193
Target:  5'- -gCGCCAGUGcgccauuAUCUGCGaCGCGUuGCAa -3'
miRNA:   3'- aaGCGGUCGU-------UGGAUGC-GCGCGuCGU- -5'
223 5' -58.4 AC_000008.1 + 8661 0.66 0.3789
Target:  5'- -gCGCgGGCaggagcugGugCUGCGCGCGUAGg- -3'
miRNA:   3'- aaGCGgUCG--------UugGAUGCGCGCGUCgu -5'
223 5' -58.4 AC_000008.1 + 18092 0.66 0.3789
Target:  5'- -cCGCCGcGCAugCgacggugcgACGCGCGCcGCc -3'
miRNA:   3'- aaGCGGU-CGUugGa--------UGCGCGCGuCGu -5'
223 5' -58.4 AC_000008.1 + 27120 0.66 0.377986
Target:  5'- -gCGCCAGC-ACCUGuCGUcaGCGCcauuaugAGCAa -3'
miRNA:   3'- aaGCGGUCGuUGGAU-GCG--CGCG-------UCGU- -5'
223 5' -58.4 AC_000008.1 + 4519 0.66 0.369827
Target:  5'- gUUGCCcGCGACCauuagAgGUGCGgCGGCAg -3'
miRNA:   3'- aAGCGGuCGUUGGa----UgCGCGC-GUCGU- -5'
223 5' -58.4 AC_000008.1 + 13436 0.66 0.360904
Target:  5'- -cUGCCAGUGGCgCauaGCGaUGCGCGGCAg -3'
miRNA:   3'- aaGCGGUCGUUG-Ga--UGC-GCGCGUCGU- -5'
223 5' -58.4 AC_000008.1 + 8277 0.66 0.358256
Target:  5'- -aCGCCGcGCgAGCCcaaaguccagaugucCGCGCGCGGCGg -3'
miRNA:   3'- aaGCGGU-CG-UUGGau-------------GCGCGCGUCGU- -5'
223 5' -58.4 AC_000008.1 + 19637 0.66 0.343512
Target:  5'- -cCGCCcGuCGGCCggugcgACGUGCGCGGUu -3'
miRNA:   3'- aaGCGGuC-GUUGGa-----UGCGCGCGUCGu -5'
223 5' -58.4 AC_000008.1 + 22139 0.67 0.326732
Target:  5'- cUCGcCCAGCAGgCgcggGCGgGUGguGCGa -3'
miRNA:   3'- aAGC-GGUCGUUgGa---UGCgCGCguCGU- -5'
223 5' -58.4 AC_000008.1 + 23674 0.67 0.310567
Target:  5'- -cCGCCGacGUuGCCaGCGCGCGCGGg- -3'
miRNA:   3'- aaGCGGU--CGuUGGaUGCGCGCGUCgu -5'
223 5' -58.4 AC_000008.1 + 17530 0.68 0.287473
Target:  5'- gUCGCCAGCccGugCUGgccccgauuucCGUGCGCAGgGu -3'
miRNA:   3'- aAGCGGUCG--UugGAU-----------GCGCGCGUCgU- -5'
223 5' -58.4 AC_000008.1 + 23167 0.68 0.280081
Target:  5'- cUCGCCuuCGAUCUcaGCGCaGCGguGCAg -3'
miRNA:   3'- aAGCGGucGUUGGA--UGCG-CGCguCGU- -5'
223 5' -58.4 AC_000008.1 + 16181 0.68 0.277894
Target:  5'- gUCGCCAccgccgccgacccgGCAcuGCCgcccaACGCGCgGCGGCGg -3'
miRNA:   3'- aAGCGGU--------------CGU--UGGa----UGCGCG-CGUCGU- -5'
223 5' -58.4 AC_000008.1 + 12191 0.68 0.265753
Target:  5'- --gGCUGGCGguggcACCcGCGCGCGCuGGCAa -3'
miRNA:   3'- aagCGGUCGU-----UGGaUGCGCGCG-UCGU- -5'
223 5' -58.4 AC_000008.1 + 31775 0.69 0.24538
Target:  5'- -cCGCUGGUcccgGGCCUAcCGCGCGC-GCAa -3'
miRNA:   3'- aaGCGGUCG----UUGGAU-GCGCGCGuCGU- -5'
223 5' -58.4 AC_000008.1 + 27226 0.69 0.238883
Target:  5'- ---aCCAGCu-CCUGCccGCGCGCGGCGc -3'
miRNA:   3'- aagcGGUCGuuGGAUG--CGCGCGUCGU- -5'
223 5' -58.4 AC_000008.1 + 25083 0.69 0.238883
Target:  5'- --gGCCAGUGGCCaaaaaaGCuaGCGCAGCAg -3'
miRNA:   3'- aagCGGUCGUUGGa-----UGcgCGCGUCGU- -5'
223 5' -58.4 AC_000008.1 + 7017 0.69 0.225707
Target:  5'- cUCGgCGGUGACCUGCacgucuaGgGCGCAGUAg -3'
miRNA:   3'- aAGCgGUCGUUGGAUG-------CgCGCGUCGU- -5'
223 5' -58.4 AC_000008.1 + 10797 0.7 0.202874
Target:  5'- -gCGCUAGCuuuuuuGGCCacuggcCGCGCGCAGCGu -3'
miRNA:   3'- aaGCGGUCG------UUGGau----GCGCGCGUCGU- -5'
223 5' -58.4 AC_000008.1 + 24400 0.71 0.181565
Target:  5'- --gGUCGGCGGCCgccacgugUGCGCGCGCGGg- -3'
miRNA:   3'- aagCGGUCGUUGG--------AUGCGCGCGUCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.