Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22300 | 5' | -59.8 | NC_005045.1 | + | 4886 | 0.66 | 0.412801 |
Target: 5'- aCGAGGCugGAcaGGCGCUcgGCgGUUUGCAg -3' miRNA: 3'- -GCUCCGugUUc-UCGCGG--CG-CGAGCGU- -5' |
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22300 | 5' | -59.8 | NC_005045.1 | + | 13519 | 0.66 | 0.407242 |
Target: 5'- cCGAGGUcaACAAGGGCgugcgcgacaucaugGCCGaCGCUgccCGCu -3' miRNA: 3'- -GCUCCG--UGUUCUCG---------------CGGC-GCGA---GCGu -5' |
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22300 | 5' | -59.8 | NC_005045.1 | + | 4376 | 0.66 | 0.403562 |
Target: 5'- uGAGGUcgAAGAGaCGgCGuUGCUCGCGg -3' miRNA: 3'- gCUCCGugUUCUC-GCgGC-GCGAGCGU- -5' |
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22300 | 5' | -59.8 | NC_005045.1 | + | 19457 | 0.66 | 0.394454 |
Target: 5'- cCGAGGC-CGAGuccccGCuCUGCGCcaUCGCAg -3' miRNA: 3'- -GCUCCGuGUUCu----CGcGGCGCG--AGCGU- -5' |
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22300 | 5' | -59.8 | NC_005045.1 | + | 15860 | 0.66 | 0.380161 |
Target: 5'- cCGAGGUGCuguGGAuGCGCCGaacgccgacugacaaCGCcgCGCAg -3' miRNA: 3'- -GCUCCGUGu--UCU-CGCGGC---------------GCGa-GCGU- -5' |
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22300 | 5' | -59.8 | NC_005045.1 | + | 40596 | 0.66 | 0.367943 |
Target: 5'- -aAGGCcgGCGAGGGCagccgccaggGCUGCGCcgCGCAg -3' miRNA: 3'- gcUCCG--UGUUCUCG----------CGGCGCGa-GCGU- -5' |
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22300 | 5' | -59.8 | NC_005045.1 | + | 5743 | 0.67 | 0.334543 |
Target: 5'- aGAGGCGCGGGuAGCGgCCa-GCUUGUg -3' miRNA: 3'- gCUCCGUGUUC-UCGC-GGcgCGAGCGu -5' |
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22300 | 5' | -59.8 | NC_005045.1 | + | 10384 | 0.68 | 0.295991 |
Target: 5'- --cGuGUACGAuGAGCGCCGCGCcauggucCGCAg -3' miRNA: 3'- gcuC-CGUGUU-CUCGCGGCGCGa------GCGU- -5' |
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22300 | 5' | -59.8 | NC_005045.1 | + | 24343 | 0.68 | 0.288708 |
Target: 5'- uCGAGGC-CAAGGGcCGUCGUGC-CGg- -3' miRNA: 3'- -GCUCCGuGUUCUC-GCGGCGCGaGCgu -5' |
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22300 | 5' | -59.8 | NC_005045.1 | + | 18590 | 0.68 | 0.288708 |
Target: 5'- cCGAGGCGCAGGuAGuCGCCGUcgGCagGUc -3' miRNA: 3'- -GCUCCGUGUUC-UC-GCGGCG--CGagCGu -5' |
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22300 | 5' | -59.8 | NC_005045.1 | + | 30236 | 0.69 | 0.260983 |
Target: 5'- gGAGGCcgaGCAGG-GCGCCguggccuggGCGCUCaaGCAg -3' miRNA: 3'- gCUCCG---UGUUCuCGCGG---------CGCGAG--CGU- -5' |
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22300 | 5' | -59.8 | NC_005045.1 | + | 11292 | 0.7 | 0.223511 |
Target: 5'- aGGGGCGCAAG-GCGUCGCcCUuugaccccCGCAa -3' miRNA: 3'- gCUCCGUGUUCuCGCGGCGcGA--------GCGU- -5' |
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22300 | 5' | -59.8 | NC_005045.1 | + | 35955 | 0.7 | 0.223511 |
Target: 5'- uGAGGCGCu---GCGCCGUGCccugggcuUCGCc -3' miRNA: 3'- gCUCCGUGuucuCGCGGCGCG--------AGCGu -5' |
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22300 | 5' | -59.8 | NC_005045.1 | + | 5395 | 1.09 | 0.000246 |
Target: 5'- aCGAGGCACAAGAGCGCCGCGCUCGCAa -3' miRNA: 3'- -GCUCCGUGUUCUCGCGGCGCGAGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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