miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22300 5' -59.8 NC_005045.1 + 4886 0.66 0.412801
Target:  5'- aCGAGGCugGAcaGGCGCUcgGCgGUUUGCAg -3'
miRNA:   3'- -GCUCCGugUUc-UCGCGG--CG-CGAGCGU- -5'
22300 5' -59.8 NC_005045.1 + 13519 0.66 0.407242
Target:  5'- cCGAGGUcaACAAGGGCgugcgcgacaucaugGCCGaCGCUgccCGCu -3'
miRNA:   3'- -GCUCCG--UGUUCUCG---------------CGGC-GCGA---GCGu -5'
22300 5' -59.8 NC_005045.1 + 4376 0.66 0.403562
Target:  5'- uGAGGUcgAAGAGaCGgCGuUGCUCGCGg -3'
miRNA:   3'- gCUCCGugUUCUC-GCgGC-GCGAGCGU- -5'
22300 5' -59.8 NC_005045.1 + 19457 0.66 0.394454
Target:  5'- cCGAGGC-CGAGuccccGCuCUGCGCcaUCGCAg -3'
miRNA:   3'- -GCUCCGuGUUCu----CGcGGCGCG--AGCGU- -5'
22300 5' -59.8 NC_005045.1 + 15860 0.66 0.380161
Target:  5'- cCGAGGUGCuguGGAuGCGCCGaacgccgacugacaaCGCcgCGCAg -3'
miRNA:   3'- -GCUCCGUGu--UCU-CGCGGC---------------GCGa-GCGU- -5'
22300 5' -59.8 NC_005045.1 + 40596 0.66 0.367943
Target:  5'- -aAGGCcgGCGAGGGCagccgccaggGCUGCGCcgCGCAg -3'
miRNA:   3'- gcUCCG--UGUUCUCG----------CGGCGCGa-GCGU- -5'
22300 5' -59.8 NC_005045.1 + 5743 0.67 0.334543
Target:  5'- aGAGGCGCGGGuAGCGgCCa-GCUUGUg -3'
miRNA:   3'- gCUCCGUGUUC-UCGC-GGcgCGAGCGu -5'
22300 5' -59.8 NC_005045.1 + 10384 0.68 0.295991
Target:  5'- --cGuGUACGAuGAGCGCCGCGCcauggucCGCAg -3'
miRNA:   3'- gcuC-CGUGUU-CUCGCGGCGCGa------GCGU- -5'
22300 5' -59.8 NC_005045.1 + 24343 0.68 0.288708
Target:  5'- uCGAGGC-CAAGGGcCGUCGUGC-CGg- -3'
miRNA:   3'- -GCUCCGuGUUCUC-GCGGCGCGaGCgu -5'
22300 5' -59.8 NC_005045.1 + 18590 0.68 0.288708
Target:  5'- cCGAGGCGCAGGuAGuCGCCGUcgGCagGUc -3'
miRNA:   3'- -GCUCCGUGUUC-UC-GCGGCG--CGagCGu -5'
22300 5' -59.8 NC_005045.1 + 30236 0.69 0.260983
Target:  5'- gGAGGCcgaGCAGG-GCGCCguggccuggGCGCUCaaGCAg -3'
miRNA:   3'- gCUCCG---UGUUCuCGCGG---------CGCGAG--CGU- -5'
22300 5' -59.8 NC_005045.1 + 11292 0.7 0.223511
Target:  5'- aGGGGCGCAAG-GCGUCGCcCUuugaccccCGCAa -3'
miRNA:   3'- gCUCCGUGUUCuCGCGGCGcGA--------GCGU- -5'
22300 5' -59.8 NC_005045.1 + 35955 0.7 0.223511
Target:  5'- uGAGGCGCu---GCGCCGUGCccugggcuUCGCc -3'
miRNA:   3'- gCUCCGUGuucuCGCGGCGCG--------AGCGu -5'
22300 5' -59.8 NC_005045.1 + 5395 1.09 0.000246
Target:  5'- aCGAGGCACAAGAGCGCCGCGCUCGCAa -3'
miRNA:   3'- -GCUCCGUGUUCUCGCGGCGCGAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.