miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22301 5' -55.1 NC_005045.1 + 24416 0.66 0.684161
Target:  5'- cUCUUCaCCG-GCA-CGACGGCccuuGGCc- -3'
miRNA:   3'- -AGAAG-GGCaCGUaGCUGCCGu---UCGcc -5'
22301 5' -55.1 NC_005045.1 + 12084 0.66 0.673119
Target:  5'- ---cUUCGUGCGcuUCGguACGGCcAAGCGGg -3'
miRNA:   3'- agaaGGGCACGU--AGC--UGCCG-UUCGCC- -5'
22301 5' -55.1 NC_005045.1 + 37447 0.66 0.673119
Target:  5'- --gUCCCG-GCggCGGCGcucaaGUAGGCGGu -3'
miRNA:   3'- agaAGGGCaCGuaGCUGC-----CGUUCGCC- -5'
22301 5' -55.1 NC_005045.1 + 16685 0.66 0.662038
Target:  5'- ---cCCCG-GCGcCGugGGCAAcGUGGu -3'
miRNA:   3'- agaaGGGCaCGUaGCugCCGUU-CGCC- -5'
22301 5' -55.1 NC_005045.1 + 6259 0.66 0.650928
Target:  5'- --aUCgCCGgcgGCGUCGugGGCAGuGUGc -3'
miRNA:   3'- agaAG-GGCa--CGUAGCugCCGUU-CGCc -5'
22301 5' -55.1 NC_005045.1 + 26871 0.67 0.628666
Target:  5'- gCggCCCGcucUGCccagCGGCGGUuAGCGGa -3'
miRNA:   3'- aGaaGGGC---ACGua--GCUGCCGuUCGCC- -5'
22301 5' -55.1 NC_005045.1 + 17189 0.67 0.628666
Target:  5'- aCUUgCCGUGCAggcgcuucUUGAUGGUgcAAGCGu -3'
miRNA:   3'- aGAAgGGCACGU--------AGCUGCCG--UUCGCc -5'
22301 5' -55.1 NC_005045.1 + 5450 0.67 0.628666
Target:  5'- --cUCuuGUGCcUCGugGGCAucauGCGc -3'
miRNA:   3'- agaAGggCACGuAGCugCCGUu---CGCc -5'
22301 5' -55.1 NC_005045.1 + 21110 0.68 0.573234
Target:  5'- gUCggCCCGUGCGU-GACcGCAcAGUGGc -3'
miRNA:   3'- -AGaaGGGCACGUAgCUGcCGU-UCGCC- -5'
22301 5' -55.1 NC_005045.1 + 30922 0.68 0.540493
Target:  5'- -gUUCUCGUcGUAcUCGACGGCGAGgaGGc -3'
miRNA:   3'- agAAGGGCA-CGU-AGCUGCCGUUCg-CC- -5'
22301 5' -55.1 NC_005045.1 + 39273 0.68 0.529715
Target:  5'- ---aCCCGcGCAccggcaagggccUCGACGGCAcccguggcugGGCGGc -3'
miRNA:   3'- agaaGGGCaCGU------------AGCUGCCGU----------UCGCC- -5'
22301 5' -55.1 NC_005045.1 + 39679 0.69 0.51264
Target:  5'- gCUUggCCCGUacauccacgucgugaGCAUCGGCGGCuggaaGGGUGGc -3'
miRNA:   3'- aGAA--GGGCA---------------CGUAGCUGCCG-----UUCGCC- -5'
22301 5' -55.1 NC_005045.1 + 41621 0.69 0.497887
Target:  5'- uUCUUCaCCuUGUA--GGCGGUGAGCGGg -3'
miRNA:   3'- -AGAAG-GGcACGUagCUGCCGUUCGCC- -5'
22301 5' -55.1 NC_005045.1 + 6907 0.69 0.47715
Target:  5'- ---cCCUGUGCGUUGACGaccggcacaGCAGGCaGGg -3'
miRNA:   3'- agaaGGGCACGUAGCUGC---------CGUUCG-CC- -5'
22301 5' -55.1 NC_005045.1 + 35981 0.72 0.337552
Target:  5'- gCUUCCUGUGCcaggCGAcgagcuuccuCGGCGAuGCGGa -3'
miRNA:   3'- aGAAGGGCACGua--GCU----------GCCGUU-CGCC- -5'
22301 5' -55.1 NC_005045.1 + 15108 0.72 0.321332
Target:  5'- aCUaCCCGaGCAguUCGACcgcagcauGGCAGGCGGg -3'
miRNA:   3'- aGAaGGGCaCGU--AGCUG--------CCGUUCGCC- -5'
22301 5' -55.1 NC_005045.1 + 25925 0.78 0.144723
Target:  5'- --aUCCCGUGuCAggacuUCGGCGGCcAGCGGu -3'
miRNA:   3'- agaAGGGCAC-GU-----AGCUGCCGuUCGCC- -5'
22301 5' -55.1 NC_005045.1 + 6449 1.12 0.000528
Target:  5'- gUCUUCCCGUGCAUCGACGGCAAGCGGg -3'
miRNA:   3'- -AGAAGGGCACGUAGCUGCCGUUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.