Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22310 | 3' | -54.5 | NC_005045.1 | + | 14211 | 0.66 | 0.694865 |
Target: 5'- --aGCGGCC-CAUGGcGGugcccGCCGGg -3' miRNA: 3'- aggCGUCGGaGUACCuUCuaa--CGGCC- -5' |
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22310 | 3' | -54.5 | NC_005045.1 | + | 19510 | 0.67 | 0.638791 |
Target: 5'- aCU-CGGCCUCggGGAAGAgacCCGGa -3' miRNA: 3'- aGGcGUCGGAGuaCCUUCUaacGGCC- -5' |
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22310 | 3' | -54.5 | NC_005045.1 | + | 53 | 0.67 | 0.593745 |
Target: 5'- aCUGCcuAGCCUCcUGGGAGcUUccggcuucGCCGGg -3' miRNA: 3'- aGGCG--UCGGAGuACCUUCuAA--------CGGCC- -5' |
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22310 | 3' | -54.5 | NC_005045.1 | + | 32182 | 0.67 | 0.593745 |
Target: 5'- gCCGCaggGGCCgaCGUGGA----UGCCGGa -3' miRNA: 3'- aGGCG---UCGGa-GUACCUucuaACGGCC- -5' |
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22310 | 3' | -54.5 | NC_005045.1 | + | 42116 | 0.67 | 0.593745 |
Target: 5'- aCUGCcuAGCCUCcUGGGAGcUUccggcuucGCCGGg -3' miRNA: 3'- aGGCG--UCGGAGuACCUUCuAA--------CGGCC- -5' |
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22310 | 3' | -54.5 | NC_005045.1 | + | 14381 | 0.68 | 0.582544 |
Target: 5'- gCCGuCGGCCUCGuaagugUGGAacAGGUcGuCCGGg -3' miRNA: 3'- aGGC-GUCGGAGU------ACCU--UCUAaC-GGCC- -5' |
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22310 | 3' | -54.5 | NC_005045.1 | + | 29468 | 0.68 | 0.549237 |
Target: 5'- cCCgGCAG-CUCAgccUGGAAGAg-GCCGGc -3' miRNA: 3'- aGG-CGUCgGAGU---ACCUUCUaaCGGCC- -5' |
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22310 | 3' | -54.5 | NC_005045.1 | + | 33104 | 0.68 | 0.549237 |
Target: 5'- gUCC-C-GCUUCGUGGAGGGUauccgcagccUGCUGGg -3' miRNA: 3'- -AGGcGuCGGAGUACCUUCUA----------ACGGCC- -5' |
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22310 | 3' | -54.5 | NC_005045.1 | + | 30291 | 0.68 | 0.549237 |
Target: 5'- cCUGCucGGCCUCcgGGAuaccuGAUagcaucacguUGCCGGc -3' miRNA: 3'- aGGCG--UCGGAGuaCCUu----CUA----------ACGGCC- -5' |
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22310 | 3' | -54.5 | NC_005045.1 | + | 21611 | 0.68 | 0.53826 |
Target: 5'- aCCGCAGCaaugCuGUGGGAGAagcUGCgGGa -3' miRNA: 3'- aGGCGUCGga--G-UACCUUCUa--ACGgCC- -5' |
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22310 | 3' | -54.5 | NC_005045.1 | + | 28485 | 0.71 | 0.39254 |
Target: 5'- gCCGUGGCCUCGcaggUGGAggccaagcgccaggGGAUgcuaGCCGGc -3' miRNA: 3'- aGGCGUCGGAGU----ACCU--------------UCUAa---CGGCC- -5' |
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22310 | 3' | -54.5 | NC_005045.1 | + | 10409 | 1.1 | 0.00069 |
Target: 5'- gUCCGCAGCCUCAUGGAAGAUUGCCGGc -3' miRNA: 3'- -AGGCGUCGGAGUACCUUCUAACGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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