miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22312 5' -55.9 NC_005045.1 + 2162 0.69 0.438496
Target:  5'- gGCGCaaGCUaagCAGC-CCCGCGUCGAu -3'
miRNA:   3'- aCGCGgaUGGa--GUUGcGGGUGUAGCU- -5'
22312 5' -55.9 NC_005045.1 + 3288 0.69 0.409448
Target:  5'- gGUGCCUGCCUCAucaGCaCCCAgGUagCGGu -3'
miRNA:   3'- aCGCGGAUGGAGU---UGcGGGUgUA--GCU- -5'
22312 5' -55.9 NC_005045.1 + 7209 0.73 0.248942
Target:  5'- gGCgGCCcGCCUaCGGCGCCCGCAU-GAc -3'
miRNA:   3'- aCG-CGGaUGGA-GUUGCGGGUGUAgCU- -5'
22312 5' -55.9 NC_005045.1 + 7754 0.68 0.458503
Target:  5'- aGCGC--GCC-CAAUccaGCCCGCGUCGGu -3'
miRNA:   3'- aCGCGgaUGGaGUUG---CGGGUGUAGCU- -5'
22312 5' -55.9 NC_005045.1 + 8786 0.66 0.58702
Target:  5'- cGCGCCUguaCUCGGCGgCCCugGguaUGAc -3'
miRNA:   3'- aCGCGGAug-GAGUUGC-GGGugUa--GCU- -5'
22312 5' -55.9 NC_005045.1 + 10314 0.7 0.37264
Target:  5'- aGUGCCUGCacuucgcgguaUUCGACGCcacCCAUAUCGGc -3'
miRNA:   3'- aCGCGGAUG-----------GAGUUGCG---GGUGUAGCU- -5'
22312 5' -55.9 NC_005045.1 + 10762 1.08 0.000644
Target:  5'- cUGCGCCUACCUCAACGCCCACAUCGAc -3'
miRNA:   3'- -ACGCGGAUGGAGUUGCGGGUGUAGCU- -5'
22312 5' -55.9 NC_005045.1 + 15473 0.66 0.608233
Target:  5'- gGCGCCccGCCUCGcucguacACGUCCGCcaCGGc -3'
miRNA:   3'- aCGCGGa-UGGAGU-------UGCGGGUGuaGCU- -5'
22312 5' -55.9 NC_005045.1 + 17719 0.66 0.564843
Target:  5'- aGC-CCUugACCUCGGCGgCCCACugcaucaugCGAg -3'
miRNA:   3'- aCGcGGA--UGGAGUUGC-GGGUGua-------GCU- -5'
22312 5' -55.9 NC_005045.1 + 18879 0.71 0.338148
Target:  5'- cUGCGCCUGCCg---UGCCCGC-UUGGu -3'
miRNA:   3'- -ACGCGGAUGGaguuGCGGGUGuAGCU- -5'
22312 5' -55.9 NC_005045.1 + 19783 0.67 0.53202
Target:  5'- cGCGCCUcGCCUUccGCGCCagGCGcUCGGu -3'
miRNA:   3'- aCGCGGA-UGGAGu-UGCGGg-UGU-AGCU- -5'
22312 5' -55.9 NC_005045.1 + 21077 0.7 0.34655
Target:  5'- gGCGCCUGCaUCGuguucgaggACGaucCCCACGUCGGc -3'
miRNA:   3'- aCGCGGAUGgAGU---------UGC---GGGUGUAGCU- -5'
22312 5' -55.9 NC_005045.1 + 22559 0.68 0.478987
Target:  5'- -uCGCCcAUCUCGGCGUCCugguaguCAUCGAc -3'
miRNA:   3'- acGCGGaUGGAGUUGCGGGu------GUAGCU- -5'
22312 5' -55.9 NC_005045.1 + 24136 0.69 0.427707
Target:  5'- cUGCGCCaUACCUgccuuaCGACGCUCGCGcagcgcagccauaUCGGc -3'
miRNA:   3'- -ACGCGG-AUGGA------GUUGCGGGUGU-------------AGCU- -5'
22312 5' -55.9 NC_005045.1 + 25007 0.67 0.510523
Target:  5'- gGCGCUcggacuCCUCGGCaCUCACGUUGAa -3'
miRNA:   3'- aCGCGGau----GGAGUUGcGGGUGUAGCU- -5'
22312 5' -55.9 NC_005045.1 + 27590 0.66 0.564843
Target:  5'- gGCGCCUACUUCAcugGCGacaaCCugAUgGu -3'
miRNA:   3'- aCGCGGAUGGAGU---UGCg---GGugUAgCu -5'
22312 5' -55.9 NC_005045.1 + 28726 0.72 0.269252
Target:  5'- gUGCGCCUG-CUCGGCGagguuCCACAUCuGAu -3'
miRNA:   3'- -ACGCGGAUgGAGUUGCg----GGUGUAG-CU- -5'
22312 5' -55.9 NC_005045.1 + 30249 0.68 0.458504
Target:  5'- gGCGCCgugGCCUgGGCGCUCAagcaGAu -3'
miRNA:   3'- aCGCGGa--UGGAgUUGCGGGUguagCU- -5'
22312 5' -55.9 NC_005045.1 + 30310 0.7 0.381629
Target:  5'- aGCGCCcagGCCaCGGCGCCCuGC-UCGGc -3'
miRNA:   3'- aCGCGGa--UGGaGUUGCGGG-UGuAGCU- -5'
22312 5' -55.9 NC_005045.1 + 31030 0.68 0.489397
Target:  5'- gGCaCCguaCUCGGCGCCCcGCAUCGc -3'
miRNA:   3'- aCGcGGaugGAGUUGCGGG-UGUAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.