Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22312 | 5' | -55.9 | NC_005045.1 | + | 10762 | 1.08 | 0.000644 |
Target: 5'- cUGCGCCUACCUCAACGCCCACAUCGAc -3' miRNA: 3'- -ACGCGGAUGGAGUUGCGGGUGUAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 31627 | 0.76 | 0.160743 |
Target: 5'- gGUGCCUACCgugggguUCGACGCCCugA-CGGg -3' miRNA: 3'- aCGCGGAUGG-------AGUUGCGGGugUaGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 7209 | 0.73 | 0.248942 |
Target: 5'- gGCgGCCcGCCUaCGGCGCCCGCAU-GAc -3' miRNA: 3'- aCG-CGGaUGGA-GUUGCGGGUGUAgCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 28726 | 0.72 | 0.269252 |
Target: 5'- gUGCGCCUG-CUCGGCGagguuCCACAUCuGAu -3' miRNA: 3'- -ACGCGGAUgGAGUUGCg----GGUGUAG-CU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 18879 | 0.71 | 0.338148 |
Target: 5'- cUGCGCCUGCCg---UGCCCGC-UUGGu -3' miRNA: 3'- -ACGCGGAUGGaguuGCGGGUGuAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 21077 | 0.7 | 0.34655 |
Target: 5'- gGCGCCUGCaUCGuguucgaggACGaucCCCACGUCGGc -3' miRNA: 3'- aCGCGGAUGgAGU---------UGC---GGGUGUAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 10314 | 0.7 | 0.37264 |
Target: 5'- aGUGCCUGCacuucgcgguaUUCGACGCcacCCAUAUCGGc -3' miRNA: 3'- aCGCGGAUG-----------GAGUUGCG---GGUGUAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 30310 | 0.7 | 0.381629 |
Target: 5'- aGCGCCcagGCCaCGGCGCCCuGC-UCGGc -3' miRNA: 3'- aCGCGGa--UGGaGUUGCGGG-UGuAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 3288 | 0.69 | 0.409448 |
Target: 5'- gGUGCCUGCCUCAucaGCaCCCAgGUagCGGu -3' miRNA: 3'- aCGCGGAUGGAGU---UGcGGGUgUA--GCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 24136 | 0.69 | 0.427707 |
Target: 5'- cUGCGCCaUACCUgccuuaCGACGCUCGCGcagcgcagccauaUCGGc -3' miRNA: 3'- -ACGCGG-AUGGA------GUUGCGGGUGU-------------AGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 2162 | 0.69 | 0.438496 |
Target: 5'- gGCGCaaGCUaagCAGC-CCCGCGUCGAu -3' miRNA: 3'- aCGCGgaUGGa--GUUGcGGGUGUAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 41583 | 0.68 | 0.448438 |
Target: 5'- aGCGCCgcCCUCGcCGCCCAgGgcagUGGc -3' miRNA: 3'- aCGCGGauGGAGUuGCGGGUgUa---GCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 32421 | 0.68 | 0.448438 |
Target: 5'- cGUGCUgucCCguaUUAGCGCCCGCGUgGAg -3' miRNA: 3'- aCGCGGau-GG---AGUUGCGGGUGUAgCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 33385 | 0.68 | 0.448438 |
Target: 5'- gGCGCCUccuggGCCgucuuaUCGACGaCCCaguACGUCGGg -3' miRNA: 3'- aCGCGGA-----UGG------AGUUGC-GGG---UGUAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 7754 | 0.68 | 0.458503 |
Target: 5'- aGCGC--GCC-CAAUccaGCCCGCGUCGGu -3' miRNA: 3'- aCGCGgaUGGaGUUG---CGGGUGUAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 30249 | 0.68 | 0.458504 |
Target: 5'- gGCGCCgugGCCUgGGCGCUCAagcaGAu -3' miRNA: 3'- aCGCGGa--UGGAgUUGCGGGUguagCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 22559 | 0.68 | 0.478987 |
Target: 5'- -uCGCCcAUCUCGGCGUCCugguaguCAUCGAc -3' miRNA: 3'- acGCGGaUGGAGUUGCGGGu------GUAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 31030 | 0.68 | 0.489397 |
Target: 5'- gGCaCCguaCUCGGCGCCCcGCAUCGc -3' miRNA: 3'- aCGcGGaugGAGUUGCGGG-UGUAGCu -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 25007 | 0.67 | 0.510523 |
Target: 5'- gGCGCUcggacuCCUCGGCaCUCACGUUGAa -3' miRNA: 3'- aCGCGGau----GGAGUUGcGGGUGUAGCU- -5' |
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22312 | 5' | -55.9 | NC_005045.1 | + | 39446 | 0.67 | 0.53202 |
Target: 5'- cGCGaCCUGCUguUCAuugACGCCaCGCA-CGAg -3' miRNA: 3'- aCGC-GGAUGG--AGU---UGCGG-GUGUaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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