Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22314 | 3' | -55 | NC_005045.1 | + | 4080 | 0.66 | 0.695152 |
Target: 5'- gCgCCUGCuACUGCAUCGcaGUGGCg- -3' miRNA: 3'- -GgGGGCGuUGAUGUAGCagUACCGgc -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 33067 | 0.66 | 0.684161 |
Target: 5'- aCCgCCUGC-GCUACAgCGaCGgugGGCCGg -3' miRNA: 3'- -GG-GGGCGuUGAUGUaGCaGUa--CCGGC- -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 42088 | 0.66 | 0.673119 |
Target: 5'- uCCCCCGUAG--GCccUCGUCuggugGGCCa -3' miRNA: 3'- -GGGGGCGUUgaUGu-AGCAGua---CCGGc -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 25 | 0.66 | 0.673119 |
Target: 5'- uCCCCCGUAG--GCccUCGUCuggugGGCCa -3' miRNA: 3'- -GGGGGCGUUgaUGu-AGCAGua---CCGGc -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 27788 | 0.66 | 0.673119 |
Target: 5'- gCCUCUGCcguguaucAGCUACAgcc-CGUGGCCGg -3' miRNA: 3'- -GGGGGCG--------UUGAUGUagcaGUACCGGC- -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 27479 | 0.66 | 0.662038 |
Target: 5'- gCCCCgGCAugUAgcUCGggaUGUGGCUGg -3' miRNA: 3'- -GGGGgCGUugAUguAGCa--GUACCGGC- -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 5564 | 0.66 | 0.662038 |
Target: 5'- aCCCCGgAGaUGCGcCG-CGUGGCCa -3' miRNA: 3'- gGGGGCgUUgAUGUaGCaGUACCGGc -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 21684 | 0.66 | 0.650928 |
Target: 5'- gUCCCGCAGCUucucccacaGCAUUGcugcggugguuuUCAUGGCg- -3' miRNA: 3'- gGGGGCGUUGA---------UGUAGC------------AGUACCGgc -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 23170 | 0.66 | 0.650928 |
Target: 5'- aCUCCUGCGAgUGCAUUgGUCAU-GUCGg -3' miRNA: 3'- -GGGGGCGUUgAUGUAG-CAGUAcCGGC- -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 32107 | 0.66 | 0.650928 |
Target: 5'- gCUCUGCGGCUcgGUCGUgcuggCAUGGCUGc -3' miRNA: 3'- gGGGGCGUUGAugUAGCA-----GUACCGGC- -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 15372 | 0.67 | 0.617535 |
Target: 5'- uCCCCUGCuggaaccGCUGCggCGggcCGUGGCgGa -3' miRNA: 3'- -GGGGGCGu------UGAUGuaGCa--GUACCGgC- -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 11077 | 0.67 | 0.606416 |
Target: 5'- uCCCCC-CAGCccaaggGCAUUGUCucGGCCu -3' miRNA: 3'- -GGGGGcGUUGa-----UGUAGCAGuaCCGGc -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 29800 | 0.67 | 0.59532 |
Target: 5'- gCCaCCCGCuguuggaaguCUGCAUCGgcccgCAaggUGGCCa -3' miRNA: 3'- -GG-GGGCGuu--------GAUGUAGCa----GU---ACCGGc -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 34560 | 0.68 | 0.584257 |
Target: 5'- aCUCCCGCAugggugACuUCGUUggGGCCa -3' miRNA: 3'- -GGGGGCGUuga---UGuAGCAGuaCCGGc -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 16221 | 0.68 | 0.584257 |
Target: 5'- aCCCCGCAccaaGCc-CGUC-UCGUGGUCGu -3' miRNA: 3'- gGGGGCGU----UGauGUAGcAGUACCGGC- -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 22493 | 0.68 | 0.584257 |
Target: 5'- aCCUCCaGCGACUcCAgcUCGUaCA-GGCCGa -3' miRNA: 3'- -GGGGG-CGUUGAuGU--AGCA-GUaCCGGC- -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 13417 | 0.68 | 0.56226 |
Target: 5'- uCUUCCGUuggauGCUGCAUCGcccaggauUCAUGGUCa -3' miRNA: 3'- -GGGGGCGu----UGAUGUAGC--------AGUACCGGc -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 26209 | 0.68 | 0.56226 |
Target: 5'- -gCCCGUAGCUGCcuguaAUCGU--UGGCCu -3' miRNA: 3'- ggGGGCGUUGAUG-----UAGCAguACCGGc -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 8634 | 0.68 | 0.551344 |
Target: 5'- gCCCCgGCAACUugAUUc-CGUGGUCc -3' miRNA: 3'- -GGGGgCGUUGAugUAGcaGUACCGGc -5' |
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22314 | 3' | -55 | NC_005045.1 | + | 41892 | 0.68 | 0.528642 |
Target: 5'- -gCCCGCAGCUugGucUCGUUGUagccagaacccagGGCCGc -3' miRNA: 3'- ggGGGCGUUGAugU--AGCAGUA-------------CCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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