miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22314 3' -55 NC_005045.1 + 4080 0.66 0.695152
Target:  5'- gCgCCUGCuACUGCAUCGcaGUGGCg- -3'
miRNA:   3'- -GgGGGCGuUGAUGUAGCagUACCGgc -5'
22314 3' -55 NC_005045.1 + 33067 0.66 0.684161
Target:  5'- aCCgCCUGC-GCUACAgCGaCGgugGGCCGg -3'
miRNA:   3'- -GG-GGGCGuUGAUGUaGCaGUa--CCGGC- -5'
22314 3' -55 NC_005045.1 + 42088 0.66 0.673119
Target:  5'- uCCCCCGUAG--GCccUCGUCuggugGGCCa -3'
miRNA:   3'- -GGGGGCGUUgaUGu-AGCAGua---CCGGc -5'
22314 3' -55 NC_005045.1 + 25 0.66 0.673119
Target:  5'- uCCCCCGUAG--GCccUCGUCuggugGGCCa -3'
miRNA:   3'- -GGGGGCGUUgaUGu-AGCAGua---CCGGc -5'
22314 3' -55 NC_005045.1 + 27788 0.66 0.673119
Target:  5'- gCCUCUGCcguguaucAGCUACAgcc-CGUGGCCGg -3'
miRNA:   3'- -GGGGGCG--------UUGAUGUagcaGUACCGGC- -5'
22314 3' -55 NC_005045.1 + 27479 0.66 0.662038
Target:  5'- gCCCCgGCAugUAgcUCGggaUGUGGCUGg -3'
miRNA:   3'- -GGGGgCGUugAUguAGCa--GUACCGGC- -5'
22314 3' -55 NC_005045.1 + 5564 0.66 0.662038
Target:  5'- aCCCCGgAGaUGCGcCG-CGUGGCCa -3'
miRNA:   3'- gGGGGCgUUgAUGUaGCaGUACCGGc -5'
22314 3' -55 NC_005045.1 + 21684 0.66 0.650928
Target:  5'- gUCCCGCAGCUucucccacaGCAUUGcugcggugguuuUCAUGGCg- -3'
miRNA:   3'- gGGGGCGUUGA---------UGUAGC------------AGUACCGgc -5'
22314 3' -55 NC_005045.1 + 23170 0.66 0.650928
Target:  5'- aCUCCUGCGAgUGCAUUgGUCAU-GUCGg -3'
miRNA:   3'- -GGGGGCGUUgAUGUAG-CAGUAcCGGC- -5'
22314 3' -55 NC_005045.1 + 32107 0.66 0.650928
Target:  5'- gCUCUGCGGCUcgGUCGUgcuggCAUGGCUGc -3'
miRNA:   3'- gGGGGCGUUGAugUAGCA-----GUACCGGC- -5'
22314 3' -55 NC_005045.1 + 15372 0.67 0.617535
Target:  5'- uCCCCUGCuggaaccGCUGCggCGggcCGUGGCgGa -3'
miRNA:   3'- -GGGGGCGu------UGAUGuaGCa--GUACCGgC- -5'
22314 3' -55 NC_005045.1 + 11077 0.67 0.606416
Target:  5'- uCCCCC-CAGCccaaggGCAUUGUCucGGCCu -3'
miRNA:   3'- -GGGGGcGUUGa-----UGUAGCAGuaCCGGc -5'
22314 3' -55 NC_005045.1 + 29800 0.67 0.59532
Target:  5'- gCCaCCCGCuguuggaaguCUGCAUCGgcccgCAaggUGGCCa -3'
miRNA:   3'- -GG-GGGCGuu--------GAUGUAGCa----GU---ACCGGc -5'
22314 3' -55 NC_005045.1 + 34560 0.68 0.584257
Target:  5'- aCUCCCGCAugggugACuUCGUUggGGCCa -3'
miRNA:   3'- -GGGGGCGUuga---UGuAGCAGuaCCGGc -5'
22314 3' -55 NC_005045.1 + 16221 0.68 0.584257
Target:  5'- aCCCCGCAccaaGCc-CGUC-UCGUGGUCGu -3'
miRNA:   3'- gGGGGCGU----UGauGUAGcAGUACCGGC- -5'
22314 3' -55 NC_005045.1 + 22493 0.68 0.584257
Target:  5'- aCCUCCaGCGACUcCAgcUCGUaCA-GGCCGa -3'
miRNA:   3'- -GGGGG-CGUUGAuGU--AGCA-GUaCCGGC- -5'
22314 3' -55 NC_005045.1 + 13417 0.68 0.56226
Target:  5'- uCUUCCGUuggauGCUGCAUCGcccaggauUCAUGGUCa -3'
miRNA:   3'- -GGGGGCGu----UGAUGUAGC--------AGUACCGGc -5'
22314 3' -55 NC_005045.1 + 26209 0.68 0.56226
Target:  5'- -gCCCGUAGCUGCcuguaAUCGU--UGGCCu -3'
miRNA:   3'- ggGGGCGUUGAUG-----UAGCAguACCGGc -5'
22314 3' -55 NC_005045.1 + 8634 0.68 0.551344
Target:  5'- gCCCCgGCAACUugAUUc-CGUGGUCc -3'
miRNA:   3'- -GGGGgCGUUGAugUAGcaGUACCGGc -5'
22314 3' -55 NC_005045.1 + 41892 0.68 0.528642
Target:  5'- -gCCCGCAGCUugGucUCGUUGUagccagaacccagGGCCGc -3'
miRNA:   3'- ggGGGCGUUGAugU--AGCAGUA-------------CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.