miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22315 5' -55.8 NC_005045.1 + 12185 1.12 0.000365
Target:  5'- cCACCAUCACCGAGCUGGCGACCAAGCa -3'
miRNA:   3'- -GUGGUAGUGGCUCGACCGCUGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 27733 0.83 0.050965
Target:  5'- gACCGUCGCUgguGAGCUGGagcuGACCAAGCa -3'
miRNA:   3'- gUGGUAGUGG---CUCGACCg---CUGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 24485 0.82 0.057376
Target:  5'- gCGCaaggaaGUCGCCGAGCUGGaCGGCCAGGa -3'
miRNA:   3'- -GUGg-----UAGUGGCUCGACC-GCUGGUUCg -5'
22315 5' -55.8 NC_005045.1 + 28665 0.75 0.17141
Target:  5'- aACC-UCGCCGAGCaGGCGcacuccauCCAGGCu -3'
miRNA:   3'- gUGGuAGUGGCUCGaCCGCu-------GGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 41637 0.75 0.173318
Target:  5'- gCGCCAUCACCGAGgUcguguacaccgcaccGGCGgGCUGAGCu -3'
miRNA:   3'- -GUGGUAGUGGCUCgA---------------CCGC-UGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 5465 0.75 0.18114
Target:  5'- gGCCGUCACCcugaAGCUGGCaggagucuGACCAuGCa -3'
miRNA:   3'- gUGGUAGUGGc---UCGACCG--------CUGGUuCG- -5'
22315 5' -55.8 NC_005045.1 + 17821 0.75 0.18114
Target:  5'- gGCCGcCGCCGAGgUGGCccuGACCGAGg -3'
miRNA:   3'- gUGGUaGUGGCUCgACCG---CUGGUUCg -5'
22315 5' -55.8 NC_005045.1 + 32838 0.74 0.202073
Target:  5'- gCACgGUCACCGGGUUGGUG-CCuacacguccugGAGCg -3'
miRNA:   3'- -GUGgUAGUGGCUCGACCGCuGG-----------UUCG- -5'
22315 5' -55.8 NC_005045.1 + 14800 0.74 0.213308
Target:  5'- gGCCga-GCCGgggaAGUUGGUGGCCGAGCg -3'
miRNA:   3'- gUGGuagUGGC----UCGACCGCUGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 39021 0.74 0.219125
Target:  5'- uCACCGcCACCGAGCgGGCGAagcugaCAcGGCa -3'
miRNA:   3'- -GUGGUaGUGGCUCGaCCGCUg-----GU-UCG- -5'
22315 5' -55.8 NC_005045.1 + 25345 0.72 0.263707
Target:  5'- gGCCAUCGCCcucccgGAGCUGGaaGAUCAAcGCa -3'
miRNA:   3'- gUGGUAGUGG------CUCGACCg-CUGGUU-CG- -5'
22315 5' -55.8 NC_005045.1 + 14170 0.72 0.270646
Target:  5'- uCugCAUCuacAUCGAGCUgGGUGACCAcGCc -3'
miRNA:   3'- -GugGUAG---UGGCUCGA-CCGCUGGUuCG- -5'
22315 5' -55.8 NC_005045.1 + 18596 0.72 0.277731
Target:  5'- aACCGcuUCACaGGGCggGGCGGCaCGAGCg -3'
miRNA:   3'- gUGGU--AGUGgCUCGa-CCGCUG-GUUCG- -5'
22315 5' -55.8 NC_005045.1 + 38948 0.72 0.284963
Target:  5'- aCGCCcaguUCACguCGaAGCUGGUGGCCGAGg -3'
miRNA:   3'- -GUGGu---AGUG--GC-UCGACCGCUGGUUCg -5'
22315 5' -55.8 NC_005045.1 + 42360 0.72 0.299872
Target:  5'- uGCCAUgCugCGucgcGCUGGUG-CCAGGCu -3'
miRNA:   3'- gUGGUA-GugGCu---CGACCGCuGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 11536 0.72 0.299872
Target:  5'- aCGCgGUgGCCGGGuCUGGUGuACCcAGCa -3'
miRNA:   3'- -GUGgUAgUGGCUC-GACCGC-UGGuUCG- -5'
22315 5' -55.8 NC_005045.1 + 41926 0.72 0.299872
Target:  5'- aGCCAUCAgcucgUCGAGgUGuGCGACCA-GCu -3'
miRNA:   3'- gUGGUAGU-----GGCUCgAC-CGCUGGUuCG- -5'
22315 5' -55.8 NC_005045.1 + 297 0.72 0.299872
Target:  5'- uGCCAUgCugCGucgcGCUGGUG-CCAGGCu -3'
miRNA:   3'- gUGGUA-GugGCu---CGACCGCuGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 25962 0.71 0.30755
Target:  5'- aUACCAuguugaucugcUCGCUGAGCUGGCccGgCAGGCg -3'
miRNA:   3'- -GUGGU-----------AGUGGCUCGACCGc-UgGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 6254 0.71 0.315377
Target:  5'- cCACCAUCGCCG-GC-GGCGuCgUggGCa -3'
miRNA:   3'- -GUGGUAGUGGCuCGaCCGCuG-GuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.