miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22315 5' -55.8 NC_005045.1 + 297 0.72 0.299872
Target:  5'- uGCCAUgCugCGucgcGCUGGUG-CCAGGCu -3'
miRNA:   3'- gUGGUA-GugGCu---CGACCGCuGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 739 0.7 0.356751
Target:  5'- cCAUCAgCGCCGcAGgU-GCGACCGAGCa -3'
miRNA:   3'- -GUGGUaGUGGC-UCgAcCGCUGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 2135 0.68 0.460363
Target:  5'- uGCCuuGUCGCggCGAGCcuUGGCGGCUuuGCg -3'
miRNA:   3'- gUGG--UAGUG--GCUCG--ACCGCUGGuuCG- -5'
22315 5' -55.8 NC_005045.1 + 2714 0.66 0.622491
Target:  5'- gAUCGUgGCCaGGGCa-GCGGCCAGGUu -3'
miRNA:   3'- gUGGUAgUGG-CUCGacCGCUGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 2865 0.67 0.544831
Target:  5'- aGCCGaCAUgGcGCUGuGCGACCAuGGCu -3'
miRNA:   3'- gUGGUaGUGgCuCGAC-CGCUGGU-UCG- -5'
22315 5' -55.8 NC_005045.1 + 4665 0.69 0.410274
Target:  5'- cCACCAcCACCGAaaccaccaccgcuGCUaccccgGGCG-CCAAGCu -3'
miRNA:   3'- -GUGGUaGUGGCU-------------CGA------CCGCuGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 4759 0.67 0.512442
Target:  5'- cCACCA-CACCGccCUGGCcaagcuGACCGAGg -3'
miRNA:   3'- -GUGGUaGUGGCucGACCG------CUGGUUCg -5'
22315 5' -55.8 NC_005045.1 + 5465 0.75 0.18114
Target:  5'- gGCCGUCACCcugaAGCUGGCaggagucuGACCAuGCa -3'
miRNA:   3'- gUGGUAGUGGc---UCGACCG--------CUGGUuCG- -5'
22315 5' -55.8 NC_005045.1 + 6254 0.71 0.315377
Target:  5'- cCACCAUCGCCG-GC-GGCGuCgUggGCa -3'
miRNA:   3'- -GUGGUAGUGGCuCGaCCGCuG-GuuCG- -5'
22315 5' -55.8 NC_005045.1 + 6415 0.66 0.577855
Target:  5'- aUACCGcuUCGgcgUCGAGCUGGagGACgAAGCc -3'
miRNA:   3'- -GUGGU--AGU---GGCUCGACCg-CUGgUUCG- -5'
22315 5' -55.8 NC_005045.1 + 6962 0.7 0.383345
Target:  5'- gGCC---GCCGAGCUGGCugguGCCGAGa -3'
miRNA:   3'- gUGGuagUGGCUCGACCGc---UGGUUCg -5'
22315 5' -55.8 NC_005045.1 + 8465 0.68 0.450282
Target:  5'- aGCUG-CGCCG-GCUGaGCGACgAGGCc -3'
miRNA:   3'- gUGGUaGUGGCuCGAC-CGCUGgUUCG- -5'
22315 5' -55.8 NC_005045.1 + 10297 0.68 0.491295
Target:  5'- gACCAagGCCGAGCUGaaGugCcuGCa -3'
miRNA:   3'- gUGGUagUGGCUCGACcgCugGuuCG- -5'
22315 5' -55.8 NC_005045.1 + 11536 0.72 0.299872
Target:  5'- aCGCgGUgGCCGGGuCUGGUGuACCcAGCa -3'
miRNA:   3'- -GUGgUAgUGGCUC-GACCGC-UGGuUCG- -5'
22315 5' -55.8 NC_005045.1 + 12185 1.12 0.000365
Target:  5'- cCACCAUCACCGAGCUGGCGACCAAGCa -3'
miRNA:   3'- -GUGGUAGUGGCUCGACCGCUGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 12449 0.66 0.596768
Target:  5'- aCGCCcUCaaggcucuggagaaACaGGGCUucgaGGCGGCCAAGCu -3'
miRNA:   3'- -GUGGuAG--------------UGgCUCGA----CCGCUGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 13238 0.66 0.577855
Target:  5'- gCGCCAguacCGCCGGGgauuCUGGCaagcGCCGGGUg -3'
miRNA:   3'- -GUGGUa---GUGGCUC----GACCGc---UGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 14170 0.72 0.270646
Target:  5'- uCugCAUCuacAUCGAGCUgGGUGACCAcGCc -3'
miRNA:   3'- -GugGUAG---UGGCUCGA-CCGCUGGUuCG- -5'
22315 5' -55.8 NC_005045.1 + 14800 0.74 0.213308
Target:  5'- gGCCga-GCCGgggaAGUUGGUGGCCGAGCg -3'
miRNA:   3'- gUGGuagUGGC----UCGACCGCUGGUUCG- -5'
22315 5' -55.8 NC_005045.1 + 15939 0.71 0.33148
Target:  5'- cCGCCAguggaUCAUCGAGCUGGaCGccuacACgAGGCg -3'
miRNA:   3'- -GUGGU-----AGUGGCUCGACC-GC-----UGgUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.