miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22321 3' -61.4 NC_005045.1 + 222 0.72 0.124395
Target:  5'- uCCCUGGCUCuGGCCCUggcugcuggGUACGggCUGUg -3'
miRNA:   3'- -GGGGCCGAG-CCGGGA---------CGUGUagGACG- -5'
22321 3' -61.4 NC_005045.1 + 2843 0.66 0.33139
Target:  5'- aCCCGGCg-GGCCgCUGCAacgcagCCgacaugGCg -3'
miRNA:   3'- gGGGCCGagCCGG-GACGUgua---GGa-----CG- -5'
22321 3' -61.4 NC_005045.1 + 3870 0.67 0.286739
Target:  5'- -gCUGGCaacuUCaGGCCCgugGCACAUCCgGUc -3'
miRNA:   3'- ggGGCCG----AG-CCGGGa--CGUGUAGGaCG- -5'
22321 3' -61.4 NC_005045.1 + 4045 0.67 0.286037
Target:  5'- aCUCGGCcuguacugcugccUCGGCCUgcugGCAgGcgCCUGCu -3'
miRNA:   3'- gGGGCCG-------------AGCCGGGa---CGUgUa-GGACG- -5'
22321 3' -61.4 NC_005045.1 + 5639 0.71 0.167323
Target:  5'- gCCCGGCUCuuGGCCaCgcgGCGCAUCUc-- -3'
miRNA:   3'- gGGGCCGAG--CCGG-Ga--CGUGUAGGacg -5'
22321 3' -61.4 NC_005045.1 + 7171 0.69 0.223066
Target:  5'- gUCUGGU--GGCCCUGgGCGUgCUGCu -3'
miRNA:   3'- gGGGCCGagCCGGGACgUGUAgGACG- -5'
22321 3' -61.4 NC_005045.1 + 7449 0.69 0.206457
Target:  5'- cCCCCGGCUCauGCUCUG-GCAUCCcaggacgugGCg -3'
miRNA:   3'- -GGGGCCGAGc-CGGGACgUGUAGGa--------CG- -5'
22321 3' -61.4 NC_005045.1 + 8674 0.72 0.138675
Target:  5'- gCCCCGGCguggaGGCCCuucaUGUACG-CCgGCa -3'
miRNA:   3'- -GGGGCCGag---CCGGG----ACGUGUaGGaCG- -5'
22321 3' -61.4 NC_005045.1 + 9821 0.7 0.176434
Target:  5'- aCCCCGaaggCGGCCCgcgccuggGUGCGUaCCUGCa -3'
miRNA:   3'- -GGGGCcga-GCCGGGa-------CGUGUA-GGACG- -5'
22321 3' -61.4 NC_005045.1 + 10358 0.69 0.22885
Target:  5'- aCUUCaGCUCGGCCUUGguCAgcggggUCUUGCg -3'
miRNA:   3'- -GGGGcCGAGCCGGGACguGU------AGGACG- -5'
22321 3' -61.4 NC_005045.1 + 13243 0.66 0.326703
Target:  5'- -gCCGGCaucugguccUCGGCCUUGUACAUgacgaggcugguggcCuCUGCa -3'
miRNA:   3'- ggGGCCG---------AGCCGGGACGUGUA---------------G-GACG- -5'
22321 3' -61.4 NC_005045.1 + 13298 0.68 0.246965
Target:  5'- uCCCCGGCgguacUGGCgCCaguUGC-CAUCCgGCc -3'
miRNA:   3'- -GGGGCCGa----GCCG-GG---ACGuGUAGGaCG- -5'
22321 3' -61.4 NC_005045.1 + 14746 1.12 0.000117
Target:  5'- uCCCCGGCUCGGCCCUGCACAUCCUGCu -3'
miRNA:   3'- -GGGGCCGAGCCGGGACGUGUAGGACG- -5'
22321 3' -61.4 NC_005045.1 + 16162 0.72 0.124395
Target:  5'- -aCgGGCUUGGUgcgggguguCCUGCACcgGUCCUGCa -3'
miRNA:   3'- ggGgCCGAGCCG---------GGACGUG--UAGGACG- -5'
22321 3' -61.4 NC_005045.1 + 16906 0.74 0.102643
Target:  5'- -aCCuGCUggUGGCCCUGCACAagCUGCu -3'
miRNA:   3'- ggGGcCGA--GCCGGGACGUGUagGACG- -5'
22321 3' -61.4 NC_005045.1 + 17876 0.67 0.308449
Target:  5'- aCCUCGGCggCGGCCaUUGCAUugaacgCCUcauGCa -3'
miRNA:   3'- -GGGGCCGa-GCCGG-GACGUGua----GGA---CG- -5'
22321 3' -61.4 NC_005045.1 + 22224 0.66 0.355562
Target:  5'- -aCCGGacagguugCGGCCUgcGCGCAucaggUCCUGCu -3'
miRNA:   3'- ggGGCCga------GCCGGGa-CGUGU-----AGGACG- -5'
22321 3' -61.4 NC_005045.1 + 23118 0.72 0.124395
Target:  5'- gCgCGGCcUGGgCCUGCGCggCCUGCu -3'
miRNA:   3'- gGgGCCGaGCCgGGACGUGuaGGACG- -5'
22321 3' -61.4 NC_005045.1 + 23290 0.67 0.301076
Target:  5'- aCCgGGUUCGGCaucaCCUGCACAUgguucggggUCgGCg -3'
miRNA:   3'- gGGgCCGAGCCG----GGACGUGUA---------GGaCG- -5'
22321 3' -61.4 NC_005045.1 + 27416 0.67 0.279776
Target:  5'- aUCCCGaGCUacaugccggggcCGGCUgaGUACAUCCagGCg -3'
miRNA:   3'- -GGGGC-CGA------------GCCGGgaCGUGUAGGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.