Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22321 | 3' | -61.4 | NC_005045.1 | + | 14746 | 1.12 | 0.000117 |
Target: 5'- uCCCCGGCUCGGCCCUGCACAUCCUGCu -3' miRNA: 3'- -GGGGCCGAGCCGGGACGUGUAGGACG- -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 2843 | 0.66 | 0.33139 |
Target: 5'- aCCCGGCg-GGCCgCUGCAacgcagCCgacaugGCg -3' miRNA: 3'- gGGGCCGagCCGG-GACGUgua---GGa-----CG- -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 3870 | 0.67 | 0.286739 |
Target: 5'- -gCUGGCaacuUCaGGCCCgugGCACAUCCgGUc -3' miRNA: 3'- ggGGCCG----AG-CCGGGa--CGUGUAGGaCG- -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 4045 | 0.67 | 0.286037 |
Target: 5'- aCUCGGCcuguacugcugccUCGGCCUgcugGCAgGcgCCUGCu -3' miRNA: 3'- gGGGCCG-------------AGCCGGGa---CGUgUa-GGACG- -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 27416 | 0.67 | 0.279776 |
Target: 5'- aUCCCGaGCUacaugccggggcCGGCUgaGUACAUCCagGCg -3' miRNA: 3'- -GGGGC-CGA------------GCCGGgaCGUGUAGGa-CG- -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 32109 | 0.67 | 0.279776 |
Target: 5'- uCUgCGGCUCGGUCgUGCugGCAUggCUGCu -3' miRNA: 3'- -GGgGCCGAGCCGGgACG--UGUAg-GACG- -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 39665 | 0.68 | 0.246965 |
Target: 5'- gCCCUGggcggcacGCUUGGCCC-GUACAUCCa-- -3' miRNA: 3'- -GGGGC--------CGAGCCGGGaCGUGUAGGacg -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 7171 | 0.69 | 0.223066 |
Target: 5'- gUCUGGU--GGCCCUGgGCGUgCUGCu -3' miRNA: 3'- gGGGCCGagCCGGGACgUGUAgGACG- -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 9821 | 0.7 | 0.176434 |
Target: 5'- aCCCCGaaggCGGCCCgcgccuggGUGCGUaCCUGCa -3' miRNA: 3'- -GGGGCcga-GCCGGGa-------CGUGUA-GGACG- -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 33140 | 0.71 | 0.166435 |
Target: 5'- cCUCCGGUccgaugcugacaCGGCCCUGagcCGCGUCCUGg -3' miRNA: 3'- -GGGGCCGa-----------GCCGGGAC---GUGUAGGACg -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 30291 | 0.79 | 0.037177 |
Target: 5'- gCCCCGGCccaGGCCCUGCGCGagUUCaGCg -3' miRNA: 3'- -GGGGCCGag-CCGGGACGUGU--AGGaCG- -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 16906 | 0.74 | 0.102643 |
Target: 5'- -aCCuGCUggUGGCCCUGCACAagCUGCu -3' miRNA: 3'- ggGGcCGA--GCCGGGACGUGUagGACG- -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 16162 | 0.72 | 0.124395 |
Target: 5'- -aCgGGCUUGGUgcgggguguCCUGCACcgGUCCUGCa -3' miRNA: 3'- ggGgCCGAGCCG---------GGACGUG--UAGGACG- -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 222 | 0.72 | 0.124395 |
Target: 5'- uCCCUGGCUCuGGCCCUggcugcuggGUACGggCUGUg -3' miRNA: 3'- -GGGGCCGAG-CCGGGA---------CGUGUagGACG- -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 42285 | 0.72 | 0.124395 |
Target: 5'- uCCCUGGCUCuGGCCCUggcugcuggGUACGggCUGUg -3' miRNA: 3'- -GGGGCCGAG-CCGGGA---------CGUGUagGACG- -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 34419 | 0.71 | 0.150357 |
Target: 5'- -aCCaGCUCGGCCCcguUGCACAgcgggCCaGCg -3' miRNA: 3'- ggGGcCGAGCCGGG---ACGUGUa----GGaCG- -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 36397 | 0.66 | 0.363891 |
Target: 5'- -aCCGGCUUGGgCCgGCGaa-UCUGCg -3' miRNA: 3'- ggGGCCGAGCCgGGaCGUguaGGACG- -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 23118 | 0.72 | 0.124395 |
Target: 5'- gCgCGGCcUGGgCCUGCGCggCCUGCu -3' miRNA: 3'- gGgGCCGaGCCgGGACGUGuaGGACG- -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 8674 | 0.72 | 0.138675 |
Target: 5'- gCCCCGGCguggaGGCCCuucaUGUACG-CCgGCa -3' miRNA: 3'- -GGGGCCGag---CCGGG----ACGUGUaGGaCG- -5' |
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22321 | 3' | -61.4 | NC_005045.1 | + | 5639 | 0.71 | 0.167323 |
Target: 5'- gCCCGGCUCuuGGCCaCgcgGCGCAUCUc-- -3' miRNA: 3'- gGGGCCGAG--CCGG-Ga--CGUGUAGGacg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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