miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22321 3' -61.4 NC_005045.1 + 13243 0.66 0.326703
Target:  5'- -gCCGGCaucugguccUCGGCCUUGUACAUgacgaggcugguggcCuCUGCa -3'
miRNA:   3'- ggGGCCG---------AGCCGGGACGUGUA---------------G-GACG- -5'
22321 3' -61.4 NC_005045.1 + 32830 0.66 0.347369
Target:  5'- -aCCGGgUUGGUgCCUaCACGUCCUGg -3'
miRNA:   3'- ggGGCCgAGCCG-GGAcGUGUAGGACg -5'
22321 3' -61.4 NC_005045.1 + 22224 0.66 0.355562
Target:  5'- -aCCGGacagguugCGGCCUgcGCGCAucaggUCCUGCu -3'
miRNA:   3'- ggGGCCga------GCCGGGa-CGUGU-----AGGACG- -5'
22321 3' -61.4 NC_005045.1 + 28599 0.69 0.23476
Target:  5'- gCCCCGGCcUGaGCCUcgGCGCuUCCgccgGCu -3'
miRNA:   3'- -GGGGCCGaGC-CGGGa-CGUGuAGGa---CG- -5'
22321 3' -61.4 NC_005045.1 + 10358 0.69 0.22885
Target:  5'- aCUUCaGCUCGGCCUUGguCAgcggggUCUUGCg -3'
miRNA:   3'- -GGGGcCGAGCCGGGACguGU------AGGACG- -5'
22321 3' -61.4 NC_005045.1 + 39224 0.69 0.223066
Target:  5'- -aCCGGCcCGGCCagaUGCGCAUCaggaaGCc -3'
miRNA:   3'- ggGGCCGaGCCGGg--ACGUGUAGga---CG- -5'
22321 3' -61.4 NC_005045.1 + 7449 0.69 0.206457
Target:  5'- cCCCCGGCUCauGCUCUG-GCAUCCcaggacgugGCg -3'
miRNA:   3'- -GGGGCCGAGc-CGGGACgUGUAGGa--------CG- -5'
22321 3' -61.4 NC_005045.1 + 30102 0.7 0.190928
Target:  5'- uCCCCaGGCgcaGGCCgaGCuGCGUacCCUGCa -3'
miRNA:   3'- -GGGG-CCGag-CCGGgaCG-UGUA--GGACG- -5'
22321 3' -61.4 NC_005045.1 + 5639 0.71 0.167323
Target:  5'- gCCCGGCUCuuGGCCaCgcgGCGCAUCUc-- -3'
miRNA:   3'- gGGGCCGAG--CCGG-Ga--CGUGUAGGacg -5'
22321 3' -61.4 NC_005045.1 + 8674 0.72 0.138675
Target:  5'- gCCCCGGCguggaGGCCCuucaUGUACG-CCgGCa -3'
miRNA:   3'- -GGGGCCGag---CCGGG----ACGUGUaGGaCG- -5'
22321 3' -61.4 NC_005045.1 + 23118 0.72 0.124395
Target:  5'- gCgCGGCcUGGgCCUGCGCggCCUGCu -3'
miRNA:   3'- gGgGCCGaGCCgGGACGUGuaGGACG- -5'
22321 3' -61.4 NC_005045.1 + 32251 0.73 0.117455
Target:  5'- uUCCGGCauccacgUCGGcCCCUGCGgCAUCCaGCc -3'
miRNA:   3'- gGGGCCG-------AGCC-GGGACGU-GUAGGaCG- -5'
22321 3' -61.4 NC_005045.1 + 36397 0.66 0.363891
Target:  5'- -aCCGGCUUGGgCCgGCGaa-UCUGCg -3'
miRNA:   3'- ggGGCCGAGCCgGGaCGUguaGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.