Results 21 - 33 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22321 | 3' | -61.4 | NC_005045.1 | + | 9821 | 0.7 | 0.176434 |
Target: 5'- aCCCCGaaggCGGCCCgcgccuggGUGCGUaCCUGCa -3' miRNA: 3'- -GGGGCcga-GCCGGGa-------CGUGUA-GGACG- -5' |
|||||||
22321 | 3' | -61.4 | NC_005045.1 | + | 5639 | 0.71 | 0.167323 |
Target: 5'- gCCCGGCUCuuGGCCaCgcgGCGCAUCUc-- -3' miRNA: 3'- gGGGCCGAG--CCGG-Ga--CGUGUAGGacg -5' |
|||||||
22321 | 3' | -61.4 | NC_005045.1 | + | 33140 | 0.71 | 0.166435 |
Target: 5'- cCUCCGGUccgaugcugacaCGGCCCUGagcCGCGUCCUGg -3' miRNA: 3'- -GGGGCCGa-----------GCCGGGAC---GUGUAGGACg -5' |
|||||||
22321 | 3' | -61.4 | NC_005045.1 | + | 34419 | 0.71 | 0.150357 |
Target: 5'- -aCCaGCUCGGCCCcguUGCACAgcgggCCaGCg -3' miRNA: 3'- ggGGcCGAGCCGGG---ACGUGUa----GGaCG- -5' |
|||||||
22321 | 3' | -61.4 | NC_005045.1 | + | 8674 | 0.72 | 0.138675 |
Target: 5'- gCCCCGGCguggaGGCCCuucaUGUACG-CCgGCa -3' miRNA: 3'- -GGGGCCGag---CCGGG----ACGUGUaGGaCG- -5' |
|||||||
22321 | 3' | -61.4 | NC_005045.1 | + | 16162 | 0.72 | 0.124395 |
Target: 5'- -aCgGGCUUGGUgcgggguguCCUGCACcgGUCCUGCa -3' miRNA: 3'- ggGgCCGAGCCG---------GGACGUG--UAGGACG- -5' |
|||||||
22321 | 3' | -61.4 | NC_005045.1 | + | 222 | 0.72 | 0.124395 |
Target: 5'- uCCCUGGCUCuGGCCCUggcugcuggGUACGggCUGUg -3' miRNA: 3'- -GGGGCCGAG-CCGGGA---------CGUGUagGACG- -5' |
|||||||
22321 | 3' | -61.4 | NC_005045.1 | + | 42285 | 0.72 | 0.124395 |
Target: 5'- uCCCUGGCUCuGGCCCUggcugcuggGUACGggCUGUg -3' miRNA: 3'- -GGGGCCGAG-CCGGGA---------CGUGUagGACG- -5' |
|||||||
22321 | 3' | -61.4 | NC_005045.1 | + | 23118 | 0.72 | 0.124395 |
Target: 5'- gCgCGGCcUGGgCCUGCGCggCCUGCu -3' miRNA: 3'- gGgGCCGaGCCgGGACGUGuaGGACG- -5' |
|||||||
22321 | 3' | -61.4 | NC_005045.1 | + | 32251 | 0.73 | 0.117455 |
Target: 5'- uUCCGGCauccacgUCGGcCCCUGCGgCAUCCaGCc -3' miRNA: 3'- gGGGCCG-------AGCC-GGGACGU-GUAGGaCG- -5' |
|||||||
22321 | 3' | -61.4 | NC_005045.1 | + | 16906 | 0.74 | 0.102643 |
Target: 5'- -aCCuGCUggUGGCCCUGCACAagCUGCu -3' miRNA: 3'- ggGGcCGA--GCCGGGACGUGUagGACG- -5' |
|||||||
22321 | 3' | -61.4 | NC_005045.1 | + | 30291 | 0.79 | 0.037177 |
Target: 5'- gCCCCGGCccaGGCCCUGCGCGagUUCaGCg -3' miRNA: 3'- -GGGGCCGag-CCGGGACGUGU--AGGaCG- -5' |
|||||||
22321 | 3' | -61.4 | NC_005045.1 | + | 14746 | 1.12 | 0.000117 |
Target: 5'- uCCCCGGCUCGGCCCUGCACAUCCUGCu -3' miRNA: 3'- -GGGGCCGAGCCGGGACGUGUAGGACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home