miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22321 5' -53.2 NC_005045.1 + 21160 0.66 0.768136
Target:  5'- cGGGCCgacgugggGAUCGUCcucgaacacgaugcaGGcGCCGccGGCCAa -3'
miRNA:   3'- -CCUGGa-------CUAGUAG---------------UU-CGGCuuCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 31646 0.66 0.76392
Target:  5'- uGGGCC---UCGUCGAGCUGugcuuGGUCAa -3'
miRNA:   3'- -CCUGGacuAGUAGUUCGGCuu---CCGGU- -5'
22321 5' -53.2 NC_005045.1 + 30209 0.66 0.753279
Target:  5'- cGGcaACgUGAUgcUAUCAGGuaucCCGGAGGCCGa -3'
miRNA:   3'- -CC--UGgACUA--GUAGUUC----GGCUUCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 4127 0.66 0.753279
Target:  5'- aGGcGCCUGc-CAgCAGGCCGAggcagcaguacAGGCCGa -3'
miRNA:   3'- -CC-UGGACuaGUaGUUCGGCU-----------UCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 23927 0.66 0.742506
Target:  5'- uGGCCUGggCAUCGcccgaguccaucAGCCGAccgauggcGGCCu -3'
miRNA:   3'- cCUGGACuaGUAGU------------UCGGCUu-------CCGGu -5'
22321 5' -53.2 NC_005045.1 + 22148 0.66 0.730518
Target:  5'- aGGACCUGAUgCGcgCAGGCCGcAaccuguccgguucGGGCa- -3'
miRNA:   3'- -CCUGGACUA-GUa-GUUCGGC-U-------------UCCGgu -5'
22321 5' -53.2 NC_005045.1 + 27771 0.66 0.720614
Target:  5'- gGGACCUGAUCAagGAuGCCucu-GCCGu -3'
miRNA:   3'- -CCUGGACUAGUagUU-CGGcuucCGGU- -5'
22321 5' -53.2 NC_005045.1 + 10064 0.67 0.702823
Target:  5'- gGGuACgUGAUCGUCGAGCCuAAGaucgacgggugccguGCCAu -3'
miRNA:   3'- -CC-UGgACUAGUAGUUCGGcUUC---------------CGGU- -5'
22321 5' -53.2 NC_005045.1 + 33774 0.67 0.698344
Target:  5'- aGACCgUGAaucUCGUCuGAGCgGucGGCCAg -3'
miRNA:   3'- cCUGG-ACU---AGUAG-UUCGgCuuCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 3322 0.67 0.664452
Target:  5'- -cGCCUGAUCG--AAGCCG-AGGCa- -3'
miRNA:   3'- ccUGGACUAGUagUUCGGCuUCCGgu -5'
22321 5' -53.2 NC_005045.1 + 24330 0.67 0.664452
Target:  5'- -cGCCUGGgcaaCGUCgAGGCCaAGGGCCGu -3'
miRNA:   3'- ccUGGACUa---GUAG-UUCGGcUUCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 6860 0.68 0.646236
Target:  5'- cGGCCUGAugguagguuccugccUCGUaguagguggUGAGCUGAAGGCCc -3'
miRNA:   3'- cCUGGACU---------------AGUA---------GUUCGGCUUCCGGu -5'
22321 5' -53.2 NC_005045.1 + 14442 0.68 0.630266
Target:  5'- uGGACUUu-UCGUUguuGCCGAGGGUCAu -3'
miRNA:   3'- -CCUGGAcuAGUAGuu-CGGCUUCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 6920 0.68 0.596094
Target:  5'- aGGaACCUac-CAUCAGGCCGGacAGGUCGa -3'
miRNA:   3'- -CC-UGGAcuaGUAGUUCGGCU--UCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 25546 0.68 0.594959
Target:  5'- cGACCg---CAUCGguaagccGGUCGAGGGCCGa -3'
miRNA:   3'- cCUGGacuaGUAGU-------UCGGCUUCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 10799 0.69 0.57346
Target:  5'- aGGAgCUGGaugugcuccUCGcUCAGGCCGGuggcGGCCAc -3'
miRNA:   3'- -CCUgGACU---------AGU-AGUUCGGCUu---CCGGU- -5'
22321 5' -53.2 NC_005045.1 + 41467 0.71 0.47509
Target:  5'- -uACCUGGUagaagGUCAGGCCGGuguuacGGCCAg -3'
miRNA:   3'- ccUGGACUAg----UAGUUCGGCUu-----CCGGU- -5'
22321 5' -53.2 NC_005045.1 + 26820 0.71 0.47509
Target:  5'- gGGGCCU--UgGUgGAGCCGguGGCCAu -3'
miRNA:   3'- -CCUGGAcuAgUAgUUCGGCuuCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 18629 0.71 0.464656
Target:  5'- -cACCUGGagcCGUC--GCCGGAGGCCAg -3'
miRNA:   3'- ccUGGACUa--GUAGuuCGGCUUCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 33208 0.71 0.434096
Target:  5'- aGGGCCgUGucagCAUCGGaCCGGAGGCCc -3'
miRNA:   3'- -CCUGG-ACua--GUAGUUcGGCUUCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.