miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22321 5' -53.2 NC_005045.1 + 14785 1.12 0.000746
Target:  5'- aGGACCUGAUCAUCAAGCCGAAGGCCAa -3'
miRNA:   3'- -CCUGGACUAGUAGUUCGGCUUCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 14394 0.74 0.292928
Target:  5'- cGGGCUUGA---UCGAGCCGucGGCCu -3'
miRNA:   3'- -CCUGGACUaguAGUUCGGCuuCCGGu -5'
22321 5' -53.2 NC_005045.1 + 32563 0.74 0.300606
Target:  5'- cGGCCUGA-CAggcugugcagcUCGcGCCGAAGGCCGu -3'
miRNA:   3'- cCUGGACUaGU-----------AGUuCGGCUUCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 28591 0.74 0.324569
Target:  5'- uGGcCCUGGaUAUCGAGCgGGAGGUCGg -3'
miRNA:   3'- -CCuGGACUaGUAGUUCGgCUUCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 26183 0.73 0.344743
Target:  5'- uGACCUGuUCAUCGccaaccugaguguaaAGCCcGAGGCCGa -3'
miRNA:   3'- cCUGGACuAGUAGU---------------UCGGcUUCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 27171 0.72 0.39523
Target:  5'- aGGACUUGAUCGUCuucGCCaaGAaguaucAGGCCGu -3'
miRNA:   3'- -CCUGGACUAGUAGuu-CGG--CU------UCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 22802 0.72 0.414383
Target:  5'- aGGGCUUGAUCAccaagcagcaCAAGCCGGcuaucgagacGGGCCu -3'
miRNA:   3'- -CCUGGACUAGUa---------GUUCGGCU----------UCCGGu -5'
22321 5' -53.2 NC_005045.1 + 15932 0.72 0.414383
Target:  5'- cGGCCUuccgccagugGAUCAUCGAGCUGGAcGCCu -3'
miRNA:   3'- cCUGGA----------CUAGUAGUUCGGCUUcCGGu -5'
22321 5' -53.2 NC_005045.1 + 11837 0.71 0.424171
Target:  5'- cGGGCCUGAagcuUCAUCAacuGGCCguagaacacGAGGGCg- -3'
miRNA:   3'- -CCUGGACU----AGUAGU---UCGG---------CUUCCGgu -5'
22321 5' -53.2 NC_005045.1 + 33208 0.71 0.434096
Target:  5'- aGGGCCgUGucagCAUCGGaCCGGAGGCCc -3'
miRNA:   3'- -CCUGG-ACua--GUAGUUcGGCUUCCGGu -5'
22321 5' -53.2 NC_005045.1 + 18629 0.71 0.464656
Target:  5'- -cACCUGGagcCGUC--GCCGGAGGCCAg -3'
miRNA:   3'- ccUGGACUa--GUAGuuCGGCUUCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 41467 0.71 0.47509
Target:  5'- -uACCUGGUagaagGUCAGGCCGGuguuacGGCCAg -3'
miRNA:   3'- ccUGGACUAg----UAGUUCGGCUu-----CCGGU- -5'
22321 5' -53.2 NC_005045.1 + 26820 0.71 0.47509
Target:  5'- gGGGCCU--UgGUgGAGCCGguGGCCAu -3'
miRNA:   3'- -CCUGGAcuAgUAgUUCGGCuuCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 10799 0.69 0.57346
Target:  5'- aGGAgCUGGaugugcuccUCGcUCAGGCCGGuggcGGCCAc -3'
miRNA:   3'- -CCUgGACU---------AGU-AGUUCGGCUu---CCGGU- -5'
22321 5' -53.2 NC_005045.1 + 25546 0.68 0.594959
Target:  5'- cGACCg---CAUCGguaagccGGUCGAGGGCCGa -3'
miRNA:   3'- cCUGGacuaGUAGU-------UCGGCUUCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 6920 0.68 0.596094
Target:  5'- aGGaACCUac-CAUCAGGCCGGacAGGUCGa -3'
miRNA:   3'- -CC-UGGAcuaGUAGUUCGGCU--UCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 14442 0.68 0.630266
Target:  5'- uGGACUUu-UCGUUguuGCCGAGGGUCAu -3'
miRNA:   3'- -CCUGGAcuAGUAGuu-CGGCUUCCGGU- -5'
22321 5' -53.2 NC_005045.1 + 6860 0.68 0.646236
Target:  5'- cGGCCUGAugguagguuccugccUCGUaguagguggUGAGCUGAAGGCCc -3'
miRNA:   3'- cCUGGACU---------------AGUA---------GUUCGGCUUCCGGu -5'
22321 5' -53.2 NC_005045.1 + 3322 0.67 0.664452
Target:  5'- -cGCCUGAUCG--AAGCCG-AGGCa- -3'
miRNA:   3'- ccUGGACUAGUagUUCGGCuUCCGgu -5'
22321 5' -53.2 NC_005045.1 + 24330 0.67 0.664452
Target:  5'- -cGCCUGGgcaaCGUCgAGGCCaAGGGCCGu -3'
miRNA:   3'- ccUGGACUa---GUAG-UUCGGcUUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.