miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22327 3' -53 NC_005045.1 + 6667 0.66 0.784751
Target:  5'- aCGCCGagaacugguGGCAGUGGUUCcucuggcaGCGgaagUACCa -3'
miRNA:   3'- aGCGGU---------UCGUCGUCAAG--------CGCaa--GUGG- -5'
22327 3' -53 NC_005045.1 + 23214 0.66 0.784751
Target:  5'- -gGCCcGGCGGCAGUU-GCuGUUCGu- -3'
miRNA:   3'- agCGGuUCGUCGUCAAgCG-CAAGUgg -5'
22327 3' -53 NC_005045.1 + 4555 0.66 0.784751
Target:  5'- gUCGUUgcGCAGCacGGUgggaCGCGgaccggUCACCu -3'
miRNA:   3'- -AGCGGuuCGUCG--UCAa---GCGCa-----AGUGG- -5'
22327 3' -53 NC_005045.1 + 13618 0.66 0.774414
Target:  5'- cUCGCuCAuGUAGCGGgcaGCGUcgGCCa -3'
miRNA:   3'- -AGCG-GUuCGUCGUCaagCGCAagUGG- -5'
22327 3' -53 NC_005045.1 + 13424 0.66 0.75328
Target:  5'- cUCGCCcuGGUuccAGUAGUUgGCGaUCugCg -3'
miRNA:   3'- -AGCGGu-UCG---UCGUCAAgCGCaAGugG- -5'
22327 3' -53 NC_005045.1 + 14932 0.66 0.75328
Target:  5'- -aGCCGguacagcaggGGCGGCAG-UCGCGccagcaucCGCCg -3'
miRNA:   3'- agCGGU----------UCGUCGUCaAGCGCaa------GUGG- -5'
22327 3' -53 NC_005045.1 + 18797 0.66 0.731614
Target:  5'- cCGCCAucGCAcCAGUcguuccagggUCGCGgcggCGCCa -3'
miRNA:   3'- aGCGGUu-CGUcGUCA----------AGCGCaa--GUGG- -5'
22327 3' -53 NC_005045.1 + 32905 0.66 0.731614
Target:  5'- aUCGCCccaGGGUuccGCAGggCaGCGUUCAUCn -3'
miRNA:   3'- -AGCGG---UUCGu--CGUCaaG-CGCAAGUGG- -5'
22327 3' -53 NC_005045.1 + 36270 0.67 0.70952
Target:  5'- cUCGCCAuagAGCuGCAuggUgGUGUUCugCa -3'
miRNA:   3'- -AGCGGU---UCGuCGUca-AgCGCAAGugG- -5'
22327 3' -53 NC_005045.1 + 3030 0.67 0.70952
Target:  5'- aCGCCucgucGUAGCGGUUCaCGgucaCGCCg -3'
miRNA:   3'- aGCGGuu---CGUCGUCAAGcGCaa--GUGG- -5'
22327 3' -53 NC_005045.1 + 17527 0.67 0.70952
Target:  5'- gUUGCUcAGCAGgGcUUUGCGUUgCGCCg -3'
miRNA:   3'- -AGCGGuUCGUCgUcAAGCGCAA-GUGG- -5'
22327 3' -53 NC_005045.1 + 35213 0.67 0.687099
Target:  5'- aCGCCAAGCAcGCcggAGUucUCGUagGUUCcCCg -3'
miRNA:   3'- aGCGGUUCGU-CG---UCA--AGCG--CAAGuGG- -5'
22327 3' -53 NC_005045.1 + 34895 0.67 0.687099
Target:  5'- aCGCCAguauuGGC-GCgGGUUCGCGguuaugUCACa -3'
miRNA:   3'- aGCGGU-----UCGuCG-UCAAGCGCa-----AGUGg -5'
22327 3' -53 NC_005045.1 + 11001 0.67 0.675798
Target:  5'- cUGCCAgcaGGCAGCGGaUCauGCGUUCuuCu -3'
miRNA:   3'- aGCGGU---UCGUCGUCaAG--CGCAAGugG- -5'
22327 3' -53 NC_005045.1 + 1290 0.68 0.653074
Target:  5'- -aGCCAucuGGCGGUagaGGUUCGaagcUUCACCa -3'
miRNA:   3'- agCGGU---UCGUCG---UCAAGCgc--AAGUGG- -5'
22327 3' -53 NC_005045.1 + 39024 0.69 0.612022
Target:  5'- cCGCCAccgAGCgggcgaagcugacacGGCAG-UCGCaggaGUUCACCu -3'
miRNA:   3'- aGCGGU---UCG---------------UCGUCaAGCG----CAAGUGG- -5'
22327 3' -53 NC_005045.1 + 26861 0.69 0.607466
Target:  5'- cUGCCcAGCGGCGGUUaGCGgaaUC-CCa -3'
miRNA:   3'- aGCGGuUCGUCGUCAAgCGCa--AGuGG- -5'
22327 3' -53 NC_005045.1 + 24868 0.69 0.607466
Target:  5'- gCGUCAAGguGCuGgagacucCGCGcUUCGCCa -3'
miRNA:   3'- aGCGGUUCguCGuCaa-----GCGC-AAGUGG- -5'
22327 3' -53 NC_005045.1 + 35499 0.69 0.607466
Target:  5'- aUCGCCGguGGCGGCug--CGgGgucgUCGCCg -3'
miRNA:   3'- -AGCGGU--UCGUCGucaaGCgCa---AGUGG- -5'
22327 3' -53 NC_005045.1 + 38797 0.7 0.551033
Target:  5'- -gGCgCGGGUAGCcgGGUUCuGCGUgaugCACCa -3'
miRNA:   3'- agCG-GUUCGUCG--UCAAG-CGCAa---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.