miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22328 5' -53.6 NC_005045.1 + 17439 1.09 0.000907
Target:  5'- gAUACACUCGCAACACCACGGCGCAACg -3'
miRNA:   3'- -UAUGUGAGCGUUGUGGUGCCGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 9390 0.72 0.361593
Target:  5'- cUACACUCucaaagaaGCGACACCguGCGGCGuCGAa -3'
miRNA:   3'- uAUGUGAG--------CGUUGUGG--UGCCGC-GUUg -5'
22328 5' -53.6 NC_005045.1 + 36015 0.72 0.370647
Target:  5'- -gGCACggCGCAGCGCCucauugGCGGCGuCGAg -3'
miRNA:   3'- uaUGUGa-GCGUUGUGG------UGCCGC-GUUg -5'
22328 5' -53.6 NC_005045.1 + 35937 0.71 0.398724
Target:  5'- -aGCACUCGaCGcCGCCAaugaGGCGCuGCg -3'
miRNA:   3'- uaUGUGAGC-GUuGUGGUg---CCGCGuUG- -5'
22328 5' -53.6 NC_005045.1 + 37314 0.71 0.398724
Target:  5'- -gGCACUCGCGGCAgucugUCGUGGCGCGc- -3'
miRNA:   3'- uaUGUGAGCGUUGU-----GGUGCCGCGUug -5'
22328 5' -53.6 NC_005045.1 + 38008 0.71 0.418182
Target:  5'- -------gGCAGCGCCugGGCGCAGg -3'
miRNA:   3'- uaugugagCGUUGUGGugCCGCGUUg -5'
22328 5' -53.6 NC_005045.1 + 4045 0.7 0.448423
Target:  5'- uGUACguACUCGCucACGCCcagGCGGCGgAACc -3'
miRNA:   3'- -UAUG--UGAGCGu-UGUGG---UGCCGCgUUG- -5'
22328 5' -53.6 NC_005045.1 + 15462 0.69 0.479836
Target:  5'- --uCGCUCGUAcacgucCGCCACGGCccgccGCAGCg -3'
miRNA:   3'- uauGUGAGCGUu-----GUGGUGCCG-----CGUUG- -5'
22328 5' -53.6 NC_005045.1 + 22333 0.69 0.501364
Target:  5'- -aAC-CUCGCcccuggcgAGCACUACGGuCGCGGCc -3'
miRNA:   3'- uaUGuGAGCG--------UUGUGGUGCC-GCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 13531 0.69 0.512287
Target:  5'- -aGgGCgugCGCGACAUCAUGGC-CGACg -3'
miRNA:   3'- uaUgUGa--GCGUUGUGGUGCCGcGUUG- -5'
22328 5' -53.6 NC_005045.1 + 13007 0.69 0.534415
Target:  5'- -gGCAUUCuCGGCGCagUACGGCGCGAg -3'
miRNA:   3'- uaUGUGAGcGUUGUG--GUGCCGCGUUg -5'
22328 5' -53.6 NC_005045.1 + 7383 0.68 0.555743
Target:  5'- uUGCGCUUGCuuuaGCCaggagucACGGCGCAGu -3'
miRNA:   3'- uAUGUGAGCGuug-UGG-------UGCCGCGUUg -5'
22328 5' -53.6 NC_005045.1 + 10386 0.68 0.579592
Target:  5'- uGUACGaugagCGCcGCGCCAUGGUccGCAGCc -3'
miRNA:   3'- -UAUGUga---GCGuUGUGGUGCCG--CGUUG- -5'
22328 5' -53.6 NC_005045.1 + 26135 0.68 0.591029
Target:  5'- --cCGCUCGuCGAacagguacagcuCGCCACGGUGCuGCg -3'
miRNA:   3'- uauGUGAGC-GUU------------GUGGUGCCGCGuUG- -5'
22328 5' -53.6 NC_005045.1 + 24743 0.68 0.591029
Target:  5'- -aGguCUCGaCGACGCgGCGGUGCAuGCg -3'
miRNA:   3'- uaUguGAGC-GUUGUGgUGCCGCGU-UG- -5'
22328 5' -53.6 NC_005045.1 + 12624 0.67 0.614005
Target:  5'- --cCAUUCGCugAAUACgACGGCGaCGGCg -3'
miRNA:   3'- uauGUGAGCG--UUGUGgUGCCGC-GUUG- -5'
22328 5' -53.6 NC_005045.1 + 36145 0.67 0.614005
Target:  5'- -gGCAUUCGCGACcucaacaucgugGCCGgcccUGGCGUGACc -3'
miRNA:   3'- uaUGUGAGCGUUG------------UGGU----GCCGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 10462 0.67 0.625524
Target:  5'- -gAgGCU-GCGG-ACCAUGGCGCGGCg -3'
miRNA:   3'- uaUgUGAgCGUUgUGGUGCCGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 21525 0.67 0.63705
Target:  5'- -gGCACUCGaCGACGCCGgaaucaGGCGgGcACa -3'
miRNA:   3'- uaUGUGAGC-GUUGUGGUg-----CCGCgU-UG- -5'
22328 5' -53.6 NC_005045.1 + 18793 0.67 0.64166
Target:  5'- gGUACGC-CGCAccaaGCACCagACcaagcgggcacggcaGGCGCAGCu -3'
miRNA:   3'- -UAUGUGaGCGU----UGUGG--UG---------------CCGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.