miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22328 5' -53.6 NC_005045.1 + 3281 0.66 0.716921
Target:  5'- gGUGCAUgaCGguAUACCACGuGCGCu-- -3'
miRNA:   3'- -UAUGUGa-GCguUGUGGUGC-CGCGuug -5'
22328 5' -53.6 NC_005045.1 + 4045 0.7 0.448423
Target:  5'- uGUACguACUCGCucACGCCcagGCGGCGgAACc -3'
miRNA:   3'- -UAUG--UGAGCGu-UGUGG---UGCCGCgUUG- -5'
22328 5' -53.6 NC_005045.1 + 5349 0.66 0.671551
Target:  5'- -cGCGCUCgGCGGCcuggaGCCGuCGGCuCAACa -3'
miRNA:   3'- uaUGUGAG-CGUUG-----UGGU-GCCGcGUUG- -5'
22328 5' -53.6 NC_005045.1 + 7383 0.68 0.555743
Target:  5'- uUGCGCUUGCuuuaGCCaggagucACGGCGCAGu -3'
miRNA:   3'- uAUGUGAGCGuug-UGG-------UGCCGCGUUg -5'
22328 5' -53.6 NC_005045.1 + 8543 0.66 0.703427
Target:  5'- --uCACggCGCAGgGCCucgucgcucagcCGGCGCAGCu -3'
miRNA:   3'- uauGUGa-GCGUUgUGGu-----------GCCGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 8766 0.66 0.682986
Target:  5'- aGUAcCGCUUGa---GCUGCGGCGCAAUg -3'
miRNA:   3'- -UAU-GUGAGCguugUGGUGCCGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 9390 0.72 0.361593
Target:  5'- cUACACUCucaaagaaGCGACACCguGCGGCGuCGAa -3'
miRNA:   3'- uAUGUGAG--------CGUUGUGG--UGCCGC-GUUg -5'
22328 5' -53.6 NC_005045.1 + 10386 0.68 0.579592
Target:  5'- uGUACGaugagCGCcGCGCCAUGGUccGCAGCc -3'
miRNA:   3'- -UAUGUga---GCGuUGUGGUGCCG--CGUUG- -5'
22328 5' -53.6 NC_005045.1 + 10462 0.67 0.625524
Target:  5'- -gAgGCU-GCGG-ACCAUGGCGCGGCg -3'
miRNA:   3'- uaUgUGAgCGUUgUGGUGCCGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 12624 0.67 0.614005
Target:  5'- --cCAUUCGCugAAUACgACGGCGaCGGCg -3'
miRNA:   3'- uauGUGAGCG--UUGUGgUGCCGC-GUUG- -5'
22328 5' -53.6 NC_005045.1 + 13007 0.69 0.534415
Target:  5'- -gGCAUUCuCGGCGCagUACGGCGCGAg -3'
miRNA:   3'- uaUGUGAGcGUUGUG--GUGCCGCGUUg -5'
22328 5' -53.6 NC_005045.1 + 13531 0.69 0.512287
Target:  5'- -aGgGCgugCGCGACAUCAUGGC-CGACg -3'
miRNA:   3'- uaUgUGa--GCGUUGUGGUGCCGcGUUG- -5'
22328 5' -53.6 NC_005045.1 + 13622 0.66 0.705684
Target:  5'- -gGCGCUCGCu-CAUguaGCGG-GCAGCg -3'
miRNA:   3'- uaUGUGAGCGuuGUGg--UGCCgCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 14219 0.66 0.705684
Target:  5'- gAUGCAgaaGCGGC-CCAUGGCGguGCc -3'
miRNA:   3'- -UAUGUgagCGUUGuGGUGCCGCguUG- -5'
22328 5' -53.6 NC_005045.1 + 15462 0.69 0.479836
Target:  5'- --uCGCUCGUAcacgucCGCCACGGCccgccGCAGCg -3'
miRNA:   3'- uauGUGAGCGUu-----GUGGUGCCG-----CGUUG- -5'
22328 5' -53.6 NC_005045.1 + 17439 1.09 0.000907
Target:  5'- gAUACACUCGCAACACCACGGCGCAACg -3'
miRNA:   3'- -UAUGUGAGCGUUGUGGUGCCGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 18756 0.67 0.648571
Target:  5'- -gAUACUa-CAGCGCCAaGGCGCAGa -3'
miRNA:   3'- uaUGUGAgcGUUGUGGUgCCGCGUUg -5'
22328 5' -53.6 NC_005045.1 + 18793 0.67 0.64166
Target:  5'- gGUACGC-CGCAccaaGCACCagACcaagcgggcacggcaGGCGCAGCu -3'
miRNA:   3'- -UAUGUGaGCGU----UGUGG--UG---------------CCGCGUUG- -5'
22328 5' -53.6 NC_005045.1 + 21525 0.67 0.63705
Target:  5'- -gGCACUCGaCGACGCCGgaaucaGGCGgGcACa -3'
miRNA:   3'- uaUGUGAGC-GUUGUGGUg-----CCGCgU-UG- -5'
22328 5' -53.6 NC_005045.1 + 22333 0.69 0.501364
Target:  5'- -aAC-CUCGCcccuggcgAGCACUACGGuCGCGGCc -3'
miRNA:   3'- uaUGuGAGCG--------UUGUGGUGCC-GCGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.