miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22332 3' -53 NC_005045.1 + 18377 1.15 0.000484
Target:  5'- cGGUUGGCCUUCAAGGUCAACCAGCCCu -3'
miRNA:   3'- -CCAACCGGAAGUUCCAGUUGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 10729 0.66 0.758529
Target:  5'- ---cGGCCUgagCGAGGagCAcauCCAGCUCc -3'
miRNA:   3'- ccaaCCGGAa--GUUCCa-GUu--GGUCGGG- -5'
22332 3' -53 NC_005045.1 + 29552 0.66 0.747843
Target:  5'- aGGUaGGCaugcagUUCcuGG-CGGCCAGCCUg -3'
miRNA:   3'- -CCAaCCGg-----AAGuuCCaGUUGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 24519 0.66 0.737031
Target:  5'- --cUGGCCcgUAAGuUCGACCAaGCCUg -3'
miRNA:   3'- ccaACCGGaaGUUCcAGUUGGU-CGGG- -5'
22332 3' -53 NC_005045.1 + 4465 0.68 0.624765
Target:  5'- ---cGGCCcugcCAAGGU-GACCGGUCCg -3'
miRNA:   3'- ccaaCCGGaa--GUUCCAgUUGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 31306 0.69 0.613387
Target:  5'- cGGUaUGGCCUUCcagauGGG-CGaaggGCguGCCCg -3'
miRNA:   3'- -CCA-ACCGGAAGu----UCCaGU----UGguCGGG- -5'
22332 3' -53 NC_005045.1 + 17655 0.69 0.613387
Target:  5'- aGUgGGCCgcCGAGGUCAagggcuACCuGCCUc -3'
miRNA:   3'- cCAaCCGGaaGUUCCAGU------UGGuCGGG- -5'
22332 3' -53 NC_005045.1 + 41404 0.7 0.55696
Target:  5'- ---cGGCCUgaccuUCuaccAGGUauGCCAGCCCg -3'
miRNA:   3'- ccaaCCGGA-----AGu---UCCAguUGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 8985 0.7 0.534776
Target:  5'- --aUGGCCcacgUCAAGGgUGGCCAGCgCa -3'
miRNA:   3'- ccaACCGGa---AGUUCCaGUUGGUCGgG- -5'
22332 3' -53 NC_005045.1 + 34850 0.68 0.670233
Target:  5'- aGGUUGGCgUUCAugcGGGauuGCCAGUUa -3'
miRNA:   3'- -CCAACCGgAAGU---UCCaguUGGUCGGg -5'
22332 3' -53 NC_005045.1 + 26190 0.68 0.623627
Target:  5'- cGUUGGCCUUgAGGuaGUCAugcACCAGgggcugaCCCa -3'
miRNA:   3'- cCAACCGGAAgUUC--CAGU---UGGUC-------GGG- -5'
22332 3' -53 NC_005045.1 + 26245 0.69 0.590696
Target:  5'- aGGUUGGCgaUgAacAGGUCAucgGCCaccguggcGGCCCg -3'
miRNA:   3'- -CCAACCGgaAgU--UCCAGU---UGG--------UCGGG- -5'
22332 3' -53 NC_005045.1 + 11934 0.69 0.579401
Target:  5'- -cUUGGCgaCUUCGAGGUCcACCuucaGGCCg -3'
miRNA:   3'- ccAACCG--GAAGUUCCAGuUGG----UCGGg -5'
22332 3' -53 NC_005045.1 + 14348 0.7 0.534776
Target:  5'- cGGgcGGCUUUgcGGGUU-ACCGGCCUg -3'
miRNA:   3'- -CCaaCCGGAAguUCCAGuUGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 29438 0.7 0.534776
Target:  5'- cGGgcGGCCU----GGUCGauggACCAGUCCa -3'
miRNA:   3'- -CCaaCCGGAaguuCCAGU----UGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 23587 0.7 0.534776
Target:  5'- cGGgucGCCUUCGAGGUUuccuGCCAggGUCCu -3'
miRNA:   3'- -CCaacCGGAAGUUCCAGu---UGGU--CGGG- -5'
22332 3' -53 NC_005045.1 + 21552 0.7 0.5238
Target:  5'- ---cGGCCaUCGcuccuAGGUCAACCuGCgCCa -3'
miRNA:   3'- ccaaCCGGaAGU-----UCCAGUUGGuCG-GG- -5'
22332 3' -53 NC_005045.1 + 11875 0.71 0.480836
Target:  5'- ---gGGCCUcgcagcgcUCcAGG-UAGCCAGCCCa -3'
miRNA:   3'- ccaaCCGGA--------AGuUCCaGUUGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 39249 0.72 0.439659
Target:  5'- ---cGcGCCUgcucgucCAGGGUCGggaACCGGCCCg -3'
miRNA:   3'- ccaaC-CGGAa------GUUCCAGU---UGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 41919 0.66 0.789707
Target:  5'- ----aGCUcgUCGAGGUgugCGACCAGCUCa -3'
miRNA:   3'- ccaacCGGa-AGUUCCA---GUUGGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.