miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22332 3' -53 NC_005045.1 + 4465 0.68 0.624765
Target:  5'- ---cGGCCcugcCAAGGU-GACCGGUCCg -3'
miRNA:   3'- ccaaCCGGaa--GUUCCAgUUGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 7109 0.66 0.758529
Target:  5'- --cUGGCCagUUCGccucgcgguGGGUgGugcuCCAGCCCa -3'
miRNA:   3'- ccaACCGG--AAGU---------UCCAgUu---GGUCGGG- -5'
22332 3' -53 NC_005045.1 + 8985 0.7 0.534776
Target:  5'- --aUGGCCcacgUCAAGGgUGGCCAGCgCa -3'
miRNA:   3'- ccaACCGGa---AGUUCCaGUUGGUCGgG- -5'
22332 3' -53 NC_005045.1 + 9878 0.73 0.372742
Target:  5'- cGGgccGCCUUCGGGGUCgGGCCAGUUg -3'
miRNA:   3'- -CCaacCGGAAGUUCCAG-UUGGUCGGg -5'
22332 3' -53 NC_005045.1 + 10349 0.67 0.726108
Target:  5'- cGGccUUGGUCagCGGGGUCuugcgGGCCAuacGCCCg -3'
miRNA:   3'- -CC--AACCGGaaGUUCCAG-----UUGGU---CGGG- -5'
22332 3' -53 NC_005045.1 + 10729 0.66 0.758529
Target:  5'- ---cGGCCUgagCGAGGagCAcauCCAGCUCc -3'
miRNA:   3'- ccaaCCGGAa--GUUCCa-GUu--GGUCGGG- -5'
22332 3' -53 NC_005045.1 + 11419 0.66 0.747843
Target:  5'- --cUGGCCUaccuugccgUCAAcGUCGucacGCCAGCCg -3'
miRNA:   3'- ccaACCGGA---------AGUUcCAGU----UGGUCGGg -5'
22332 3' -53 NC_005045.1 + 11611 0.67 0.715083
Target:  5'- ---cGGCCUgcuGGGUacACCAGaCCCg -3'
miRNA:   3'- ccaaCCGGAaguUCCAguUGGUC-GGG- -5'
22332 3' -53 NC_005045.1 + 11875 0.71 0.480836
Target:  5'- ---gGGCCUcgcagcgcUCcAGG-UAGCCAGCCCa -3'
miRNA:   3'- ccaaCCGGA--------AGuUCCaGUUGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 11934 0.69 0.579401
Target:  5'- -cUUGGCgaCUUCGAGGUCcACCuucaGGCCg -3'
miRNA:   3'- ccAACCG--GAAGUUCCAGuUGG----UCGGg -5'
22332 3' -53 NC_005045.1 + 12260 0.66 0.747843
Target:  5'- ---gGGCCgugCuuGGUC-GCCAGCUCg -3'
miRNA:   3'- ccaaCCGGaa-GuuCCAGuUGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 12392 0.68 0.670233
Target:  5'- aGGUUGGUC----AGGUUGAUCAGgCCg -3'
miRNA:   3'- -CCAACCGGaaguUCCAGUUGGUCgGG- -5'
22332 3' -53 NC_005045.1 + 14348 0.7 0.534776
Target:  5'- cGGgcGGCUUUgcGGGUU-ACCGGCCUg -3'
miRNA:   3'- -CCaaCCGGAAguUCCAGuUGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 14854 0.67 0.726108
Target:  5'- -cUUGGCCUUCGgcuugaugaucAGGUCcucgccGCCA-CCCa -3'
miRNA:   3'- ccAACCGGAAGU-----------UCCAGu-----UGGUcGGG- -5'
22332 3' -53 NC_005045.1 + 17655 0.69 0.613387
Target:  5'- aGUgGGCCgcCGAGGUCAagggcuACCuGCCUc -3'
miRNA:   3'- cCAaCCGGaaGUUCCAGU------UGGuCGGG- -5'
22332 3' -53 NC_005045.1 + 18377 1.15 0.000484
Target:  5'- cGGUUGGCCUUCAAGGUCAACCAGCCCu -3'
miRNA:   3'- -CCAACCGGAAGUUCCAGUUGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 18441 0.67 0.692783
Target:  5'- uGGUUGaCCUUgAAGGcCAACCGGaCUu -3'
miRNA:   3'- -CCAACcGGAAgUUCCaGUUGGUCgGG- -5'
22332 3' -53 NC_005045.1 + 19842 0.66 0.778441
Target:  5'- ---aGGgCUUCuuGGUCAggcuucgcgacagACCAGCCUu -3'
miRNA:   3'- ccaaCCgGAAGuuCCAGU-------------UGGUCGGG- -5'
22332 3' -53 NC_005045.1 + 21552 0.7 0.5238
Target:  5'- ---cGGCCaUCGcuccuAGGUCAACCuGCgCCa -3'
miRNA:   3'- ccaaCCGGaAGU-----UCCAGUUGGuCG-GG- -5'
22332 3' -53 NC_005045.1 + 23235 0.67 0.70397
Target:  5'- uGUUGGCaa-CcAGGUUAGCgaGGCCCg -3'
miRNA:   3'- cCAACCGgaaGuUCCAGUUGg-UCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.